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    LAC4 Beta-galactosidase (Lactase) [ Scheffersomyces stipitis CBS 6054 ]

    Gene ID: 4837088, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LAC4
    Gene description
    Beta-galactosidase (Lactase)
    Locus tag
    PICST_30036
    Gene type
    protein coding
    RNA name
    Beta-galactosidase (Lactase)
    RefSeq status
    PROVISIONAL
    Organism
    Scheffersomyces stipitis CBS 6054 (strain: CBS 6054)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Scheffersomyces
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    Genomic context

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    See LAC4 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_009042.1 (1783793..1786915)

    Chromosome 2 - NC_009042.1Genomic Context describing neighboring genes Neighboring gene monocarboxylate permease homolog Neighboring gene Lactose permease Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009042.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. Jeffries TW, et al. Nat Biotechnol, 2007 Mar. PMID 17334359
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables beta-galactosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lactose catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of beta-galactosidase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    Beta-galactosidase (Lactase)
    XP_001382569.2
    • Beta-galactosidase (Lactase) (BGAL)
      go_component beta-galactosidase complex
      go_funtion hydrolase activity, hydrolyzing O-glycosyl compounds; beta-galactosidase activity
      go_process carbohydrate metabolism

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_009042.1 Reference assembly

      Range
      1783793..1786915
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001382532.1 → XP_001382569.2  Beta-galactosidase (Lactase) [Scheffersomyces stipitis CBS 6054]

      See identical proteins and their annotated locations for XP_001382569.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A3LPQ6
      Conserved Domains (6) summary
      PRK10340
      Location:16 → 1021
      ebgA; cryptic beta-D-galactosidase subunit alpha; Reviewed
      pfam00703
      Location:207 → 306
      Glyco_hydro_2; Glycosyl hydrolases family 2
      pfam02837
      Location:37 → 200
      Glyco_hydro_2_N; Glycosyl hydrolases family 2, sugar binding domain
      pfam02929
      Location:746 → 1016
      Bgal_small_N; Beta galactosidase small chain
      pfam16353
      Location:621 → 710
      DUF4981; Domain of unknown function(DUF4981)
      cl23725
      Location:308 → 614
      Glyco_hydro_1; Glycosyl hydrolase family 1
    Nucleotide Protein
    Heading Accession and Version

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