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    RAD7 nucleotide excision repair protein [ Scheffersomyces stipitis CBS 6054 ]

    Gene ID: 4838041, updated on 21-Dec-2023

    Summary

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    Gene symbol
    RAD7
    Gene description
    nucleotide excision repair protein
    Locus tag
    PICST_2329
    Gene type
    protein coding
    RNA name
    nucleotide excision repair protein
    RefSeq status
    PROVISIONAL
    Organism
    Scheffersomyces stipitis CBS 6054 (strain: CBS 6054)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Scheffersomyces
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    Genomic context

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    See RAD7 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_009043.1 (820437..822296)

    Chromosome 3 - NC_009043.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene nucleotide excision repair protein (ubiquitin-like protein) Neighboring gene pre-mRNA splicing factor Neighboring gene associated with U1 snRNP

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009043.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. Jeffries TW, et al. Nat Biotechnol, 2007 Mar. PMID 17334359
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SCF ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    nucleotide excision repair protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_009043.1 Reference assembly

      Range
      820437..822296
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001383402.2 → XP_001383439.2  nucleotide excision repair protein, partial [Scheffersomyces stipitis CBS 6054]

      See identical proteins and their annotated locations for XP_001383439.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A3LRM4
      Conserved Domains (2) summary
      cd09293
      Location:265 → 466
      AMN1; Antagonist of mitotic exit network protein 1
      sd00034
      Location:253 → 278
      LRR_AMN1; leucine-rich repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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