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    cdca4 cell division cycle associated 4 [ Danio rerio (zebrafish) ]

    Gene ID: 494037, updated on 4-Jan-2025

    Summary

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    Official Symbol
    cdca4provided by ZNC
    Official Full Name
    cell division cycle associated 4provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-1695
    See related
    Ensembl:ENSDARG00000042319 AllianceGenome:ZFIN:ZDB-GENE-030131-1695
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fb78b08; zgc:92217; wu:fb78b08; si:dkey-177p2.7
    Summary
    Predicted to act upstream of or within cell division. Orthologous to human CDCA4 (cell division cycle associated 4). [provided by Alliance of Genome Resources, Jan 2025]
    Orthologs
    all
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    Genomic context

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    See cdca4 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (26939824..26946248)
    105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (27040588..27047158)

    Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene finTRIM family, member 79 Neighboring gene uncharacterized LOC100150342 Neighboring gene si:dkey-177p2.6 Neighboring gene AHA1, activator of heat shock protein ATPase homolog 1a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. The TATA-binding protein regulates maternal mRNA degradation and differential zygotic transcription in zebrafish. Ferg M, et al. EMBO J, 2007 Sep 5. PMID 17703193, Free PMC Article
    2. Single-cell mapping of gene expression landscapes and lineage in the zebrafish embryo. Wagner DE, et al. Science, 2018 Jun 1. PMID 29700229, Free PMC Article
    3. Positive correlation between gene coexpression and positional clustering in the zebrafish genome. Ng YK, et al. BMC Genomics, 2009 Jan 22. PMID 19159490, Free PMC Article
    4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    acts_upstream_of_or_within cell division IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    cell division cycle-associated protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001008580.1 → NP_001008580.1  cell division cycle-associated protein 4

      See identical proteins and their annotated locations for NP_001008580.1

      Status: PROVISIONAL

      Source sequence(s)
      BC086964
      UniProtKB/TrEMBL
      F6NH38, U3JAP1
      Related
      ENSDARP00000127309.1, ENSDART00000152992.2
      Conserved Domains (1) summary
      pfam06031
      Location:38 → 73
      SERTA; SERTA motif

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007131.7 Reference GRCz11 Primary Assembly

      Range
      26939824..26946248
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009300568.4 → XP_009298843.1  cell division cycle-associated protein 4 isoform X2

      See identical proteins and their annotated locations for XP_009298843.1

      UniProtKB/TrEMBL
      F6NH38, U3JAP1
      Conserved Domains (1) summary
      pfam06031
      Location:38 → 73
      SERTA; SERTA motif

    2. XM_068215425.1 → XP_068071526.1  cell division cycle-associated protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A8M2B7E4

    3. XM_068215428.1 → XP_068071529.1  cell division cycle-associated protein 4 isoform X2

      UniProtKB/TrEMBL
      F6NH38, U3JAP1

    4. XM_068215426.1 → XP_068071527.1  cell division cycle-associated protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A8M2B7E4

    5. XM_005160568.5 → XP_005160625.1  cell division cycle-associated protein 4 isoform X2

      See identical proteins and their annotated locations for XP_005160625.1

      UniProtKB/TrEMBL
      F6NH38, U3JAP1
      Related
      ENSDARP00000123471.1, ENSDART00000138369.3
      Conserved Domains (1) summary
      pfam06031
      Location:38 → 73
      SERTA; SERTA motif

    6. XM_005160570.5 → XP_005160627.1  cell division cycle-associated protein 4 isoform X2

      See identical proteins and their annotated locations for XP_005160627.1

      UniProtKB/TrEMBL
      F6NH38, U3JAP1
      Conserved Domains (1) summary
      pfam06031
      Location:38 → 73
      SERTA; SERTA motif

    7. XM_005160569.5 → XP_005160626.1  cell division cycle-associated protein 4 isoform X2

      See identical proteins and their annotated locations for XP_005160626.1

      UniProtKB/TrEMBL
      F6NH38, U3JAP1
      Related
      ENSDARP00000062060.4, ENSDART00000062061.5
      Conserved Domains (1) summary
      pfam06031
      Location:38 → 73
      SERTA; SERTA motif

    8. XM_068215427.1 → XP_068071528.1  cell division cycle-associated protein 4 isoform X2

      UniProtKB/TrEMBL
      F6NH38, U3JAP1

    9. XM_005160563.5 → XP_005160620.1  cell division cycle-associated protein 4 isoform X1

      See identical proteins and their annotated locations for XP_005160620.1

      UniProtKB/TrEMBL
      A0A8M2B7E4
      Conserved Domains (1) summary
      pfam06031
      Location:64 → 100
      SERTA; SERTA motif

    10. XM_005160564.5 → XP_005160621.1  cell division cycle-associated protein 4 isoform X1

      See identical proteins and their annotated locations for XP_005160621.1

      UniProtKB/TrEMBL
      A0A8M2B7E4
      Conserved Domains (1) summary
      pfam06031
      Location:64 → 100
      SERTA; SERTA motif
    Nucleotide Protein
    Heading Accession and Version

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