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    def peptide deformylase [ Staphylococcus epidermidis ]

    Gene ID: 50019072, updated on 3-Dec-2024

    Summary

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    Gene symbol
    def
    Gene description
    peptide deformylase
    Locus tag
    EQW00_RS08690
    Gene type
    protein coding
    Organism
    Staphylococcus epidermidis (strain: ATCC 14990, culture-collection: ATCC:14990, type-material: type strain of Staphylococcus epidermidis)
    Lineage
    Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus
    Old locus tag
    EQW00_08695
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    Genomic context

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    NZ_CP035288.1Genomic Context describing neighboring genes Neighboring gene pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha Neighboring gene YkyA family protein Neighboring gene DNA-dependent RNA polymerase subunit epsilon Neighboring gene ribonuclease J

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NZ_CP035288.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Combined antibiotic stewardship and infection control measures to contain the spread of linezolid-resistant Staphylococcus epidermidis in an intensive care unit. Papan C, et al. Antimicrob Resist Infect Control, 2021 Jun 30. PMID 34193293, Free PMC Article
    2. Structure-function relationships within the peptide deformylase family. Evidence for a conserved architecture of the active site involving three conserved motifs and a metal ion. Meinnel T, et al. J Mol Biol, 1997 Apr 4. PMID 9126850

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    peptide deformylase
    WP_001831696.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NZ_CP035288.1 Reference assembly

      Range
      1797711..1798262
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_001831696.1 MULTISPECIES: peptide deformylase [Staphylococcus]

      See identical proteins and their annotated locations for WP_001831696.1

      UniProtKB/Swiss-Prot
      Q5HQ78, Q8CPN4
      UniProtKB/TrEMBL
      A0A4Q9W4C0, A0A9Q5JJ89, A0AAV3D974
      Conserved Domains (1) summary
      PRK00150
      Location:2 → 175
      def; peptide deformylase; Reviewed
    Nucleotide Protein
    Heading Accession and Version

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