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    PPP1R13L protein phosphatase 1 regulatory subunit 13 like [ Bos taurus (domestic cattle) ]

    Gene ID: 505818, updated on 27-Dec-2024

    Summary

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    Official Symbol
    PPP1R13Lprovided by VGNC
    Official Full Name
    protein phosphatase 1 regulatory subunit 13 likeprovided by VGNC
    Primary source
    VGNC:VGNC:33225
    See related
    BGD:BT19652; Ensembl:ENSBTAG00000020689
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See PPP1R13L in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 18 NC_037345.1 (53005623..53022682, complement)

    Chromosome 18 - NC_037345.1Genomic Context describing neighboring genes Neighboring gene creatine kinase, M-type Neighboring gene kinesin light chain 3 Neighboring gene ERCC excision repair 2, TFIIH core complex helicase subunit Neighboring gene RNA polymerase I subunit G Neighboring gene ERCC excision repair 1, endonuclease non-catalytic subunit Neighboring gene uncharacterized LOC112442336 Neighboring gene FosB proto-oncogene, AP-1 transcription factor subunit

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037345.1 Chromosome 18 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A mutation in NFkappaB interacting protein 1 causes cardiomyopathy and woolly haircoat syndrome of Poll Hereford cattle. Simpson MA, et al. Anim Genet, 2009 Feb. PMID 19016676
    2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Frameshift mutation in PPP1R13L causes Cardiomyopathy and woolly haircoat syndrome in Poll Hereford cattle.
      Title: A mutation in NFkappaB interacting protein 1 causes cardiomyopathy and woolly haircoat syndrome of Poll Hereford cattle.
    Submit: New GeneRIF Correction

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC139923

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription factor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    relA-associated inhibitor
    Names
    protein phosphatase 1, regulatory (inhibitor) subunit 13 like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001075224.1 → NP_001068692.1  relA-associated inhibitor

      See identical proteins and their annotated locations for NP_001068692.1

      Status: PROVISIONAL

      Source sequence(s)
      BC119918
      UniProtKB/TrEMBL
      Q0VCZ5
      Related
      ENSBTAP00000027570.6, ENSBTAT00000027570.7
      Conserved Domains (4) summary
      cd11952
      Location:763 → 819
      SH3_iASPP; Src Homology 3 (SH3) domain of Inhibitor of ASPP protein (iASPP)
      cd00204
      Location:628 → 750
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      sd00045
      Location:633 → 659
      ANK; ANK repeat [structural motif]
      cl26464
      Location:46 → 519
      Atrophin-1; Atrophin-1 family

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037345.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      53005623..53022682 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005219203.4 → XP_005219260.1  relA-associated inhibitor isoform X2

      See identical proteins and their annotated locations for XP_005219260.1

      UniProtKB/TrEMBL
      Q0VCZ5
      Conserved Domains (4) summary
      cd11952
      Location:763 → 819
      SH3_iASPP; Src Homology 3 (SH3) domain of Inhibitor of ASPP protein (iASPP)
      cd00204
      Location:628 → 750
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      sd00045
      Location:633 → 659
      ANK; ANK repeat [structural motif]
      cl26464
      Location:46 → 519
      Atrophin-1; Atrophin-1 family

    2. XM_010815010.4 → XP_010813312.2  relA-associated inhibitor isoform X1

    3. XM_024978029.2 → XP_024833797.1  relA-associated inhibitor isoform X2

      UniProtKB/TrEMBL
      Q0VCZ5
      Conserved Domains (4) summary
      cd11952
      Location:763 → 819
      SH3_iASPP; Src Homology 3 (SH3) domain of Inhibitor of ASPP protein (iASPP)
      cd00204
      Location:628 → 750
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      sd00045
      Location:633 → 659
      ANK; ANK repeat [structural motif]
      cl26464
      Location:46 → 519
      Atrophin-1; Atrophin-1 family

    4. XM_010815011.3 → XP_010813313.1  relA-associated inhibitor isoform X2

      See identical proteins and their annotated locations for XP_010813313.1

      UniProtKB/TrEMBL
      Q0VCZ5
      Conserved Domains (4) summary
      cd11952
      Location:763 → 819
      SH3_iASPP; Src Homology 3 (SH3) domain of Inhibitor of ASPP protein (iASPP)
      cd00204
      Location:628 → 750
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      sd00045
      Location:633 → 659
      ANK; ANK repeat [structural motif]
      cl26464
      Location:46 → 519
      Atrophin-1; Atrophin-1 family

    5. XM_059876552.1 → XP_059732535.1  relA-associated inhibitor isoform X2

      UniProtKB/TrEMBL
      Q0VCZ5
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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