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    UTP25 UTP25 small subunit processome component [ Bos taurus (domestic cattle) ]

    Gene ID: 510385, updated on 4-Oct-2024

    Summary

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    Official Symbol
    UTP25provided by VGNC
    Official Full Name
    UTP25 small subunit processome componentprovided by VGNC
    Primary source
    VGNC:VGNC:54509
    See related
    Ensembl:ENSBTAG00000020886
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    DIEXF
    Orthologs
    human mouse all
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    Genomic context

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    See UTP25 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 16 NC_037343.1 (73447308..73474259, complement)

    Chromosome 16 - NC_037343.1Genomic Context describing neighboring genes Neighboring gene SERTA domain containing 4 Neighboring gene synaptotagmin 14 Neighboring gene cyclin-dependent kinase 1-like Neighboring gene uncharacterized LOC132342426 Neighboring gene interferon regulatory factor 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037343.1 Chromosome 16 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables U3 snoRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables rRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of small-subunit processome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U3 small nucleolar RNA-associated protein 25 homolog
    Names
    UTP25 small subunit processor component
    digestive organ expansion factor homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001105352.1 → NP_001098822.1  U3 small nucleolar RNA-associated protein 25 homolog

      See identical proteins and their annotated locations for NP_001098822.1

      Status: PROVISIONAL

      Source sequence(s)
      BC134497
      UniProtKB/TrEMBL
      A7YWC9, F1MDA2, G3MZ85
      Related
      ENSBTAP00000027825.5, ENSBTAT00000027825.6
      Conserved Domains (1) summary
      pfam06862
      Location:273 → 748
      UTP25; Utp25, U3 small nucleolar RNA-associated SSU processome protein 25

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037343.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      73447308..73474259 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005217338.5 → XP_005217395.1  U3 small nucleolar RNA-associated protein 25 homolog isoform X1

      UniProtKB/TrEMBL
      G3MZ85
      Conserved Domains (1) summary
      pfam06862
      Location:176 → 651
      UTP25; Utp25, U3 small nucleolar RNA-associated SSU processome protein 25
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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