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    Ssxb15 SSX member B15 [ Mus musculus (house mouse) ]

    Gene ID: 546263, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Ssxb15provided by MGI
    Official Full Name
    SSX member B15provided by MGI
    Primary source
    MGI:MGI:3650385
    See related
    Ensembl:ENSMUSG00000079704 AllianceGenome:MGI:3650385
    Gene type
    protein coding
    RefSeq status
    INFERRED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm14459
    Summary
    Predicted to be located in sperm flagellum. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in X-linked spermatogenic failure 5 and synovial sarcoma. Orthologous to several human genes including SSX2 (SSX family member 2); SSX2B (SSX family member 2B); and SSX4 (SSX family member 4). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See Ssxb15 in Genome Data Viewer
    Location:
    X A1.1; X 3.86 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (8379782..8392965, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (8513543..8526726, complement)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_46696 Neighboring gene SSX member B1 Neighboring gene SSX member B2 Neighboring gene STARR-seq mESC enhancer starr_46697 Neighboring gene SSX member B6 Neighboring gene STARR-seq mESC enhancer starr_46698 Neighboring gene SSX member B3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in sperm flagellum ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    synovial sarcoma, X member B family member
    Names
    novel synovial sarcoma, X member B family member

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001126491.1 → NP_001119963.1  synovial sarcoma, X member B family member

      Status: INFERRED

      Source sequence(s)
      BX890578
      Consensus CDS
      CCDS52992.1
      UniProtKB/TrEMBL
      A2BI73
      Related
      ENSMUSP00000111236.3, ENSMUST00000115573.3
      Conserved Domains (3) summary
      cd07765
      Location:33 → 70
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
      smart00349
      Location:32 → 87
      KRAB; krueppel associated box
      pfam09514
      Location:144 → 175
      SSXRD; SSXRD motif

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      8379782..8392965 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006527648.1 → XP_006527711.1  synovial sarcoma, X member B family member isoform X1

      Conserved Domains (2) summary
      pfam09514
      Location:130 → 161
      SSXRD; SSXRD motif
      cl02581
      Location:60 → 115
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    Nucleotide Protein
    Heading Accession and Version

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