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    LOC5513881 transient receptor potential cation channel subfamily M member 7 [ Nematostella vectensis (starlet sea anemone) ]

    Gene ID: 5513881, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC5513881
    Gene description
    transient receptor potential cation channel subfamily M member 7
    Locus tag
    NEMVEDRAFT_v1g205845
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nematostella vectensis
    Lineage
    Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella
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    Genomic context

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    See LOC5513881 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    37
    Annotation release Status Assembly Chr Location
    101 current jaNemVect1.1 (GCF_932526225.1) 14 NC_064047.1 (5903981..5935712, complement)
    100 previous assembly ASM20922v1 (GCF_000209225.1) Unplaced Scaffold NW_001834351.1 (527306..561267)

    Chromosome 14 - NC_064047.1Genomic Context describing neighboring genes Neighboring gene protein TFG Neighboring gene tRNA (cytosine(34)-C(5))-methyltransferase, mitochondrial Neighboring gene polyamine oxidase 7 Neighboring gene uncharacterized LOC125559895

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables monoatomic cation channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in monoatomic cation transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transient receptor potential cation channel subfamily M member 7
    Names
    predicted protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Nematostella vectensis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference jaNemVect1.1

    Genomic

    1. NC_064047.1 Reference jaNemVect1.1

      Range
      5903981..5935712 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_048721853.1 → XP_048577810.1  transient receptor potential cation channel subfamily M member 7 isoform X3

    2. XM_048721851.1 → XP_048577808.1  transient receptor potential cation channel subfamily M member 7 isoform X1

    3. XM_048721852.1 → XP_048577809.1  transient receptor potential cation channel subfamily M member 7 isoform X2

    4. XM_048721856.1 → XP_048577813.1  transient receptor potential cation channel subfamily M member 7 isoform X4

    5. XM_048721854.1 → XP_048577811.1  transient receptor potential cation channel subfamily M member 7 isoform X4

    6. XM_048721858.1 → XP_048577815.1  transient receptor potential cation channel subfamily M member 7 isoform X4

    7. XM_048721857.1 → XP_048577814.1  transient receptor potential cation channel subfamily M member 7 isoform X4

    8. XM_048721855.1 → XP_048577812.1  transient receptor potential cation channel subfamily M member 7 isoform X4

    Nucleotide Protein
    Heading Accession and Version

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