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    HER10_EVM0010946 putative zinc knuckle [ Colletotrichum scovillei ]

    Gene ID: 55984999, updated on 30-Nov-2023

    Summary

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    Gene symbol
    HER10_EVM0010946
    Gene description
    putative zinc knuckle
    Locus tag
    HER10_EVM0010946
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Colletotrichum scovillei (strain: TJNH1, nat-host: Capsicum annuum)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Glomerellales; Glomerellaceae; Colletotrichum; Colletotrichum acutatum species complex
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    Genomic context

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    See HER10_EVM0010946 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    2

    NW_023336273.1Genomic Context describing neighboring genes Neighboring gene flavin-containing superfamily Amine oxidase Neighboring gene cytochrome p450 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_023336273.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome Sequence Resource for Colletotrichum scovillei, the Cause of Anthracnose Disease of Chili. Huo J, et al. Mol Plant Microbe Interact, 2021 Jan. PMID 33006530
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA-DNA hybrid ribonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative zinc knuckle

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_023336273.1 Reference assembly

      Range
      329180..332935 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035480390.1 → XP_035325751.1  putative zinc knuckle [Colletotrichum scovillei]

      Status: PROVISIONAL

      Conserved Domains (2) summary
      cd09276
      Location:715 → 847
      Rnase_HI_RT_non_LTR; non-LTR RNase HI domain of reverse transcriptases
      pfam14529
      Location:90 → 213
      Exo_endo_phos_2; Endonuclease-reverse transcriptase
    Nucleotide Protein
    Heading Accession and Version

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