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    HER10_EVM0013214 calpain family cysteine protease [ Colletotrichum scovillei ]

    Gene ID: 55987266, updated on 30-Nov-2023

    Summary

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    Gene symbol
    HER10_EVM0013214
    Gene description
    calpain family cysteine protease
    Locus tag
    HER10_EVM0013214
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Colletotrichum scovillei (strain: TJNH1, nat-host: Capsicum annuum)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Glomerellales; Glomerellaceae; Colletotrichum; Colletotrichum acutatum species complex
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    Genomic context

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    See HER10_EVM0013214 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    2

    NW_023336273.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene calcium/proton exchanger Neighboring gene F-box domain-containing protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_023336273.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome Sequence Resource for Colletotrichum scovillei, the Cause of Anthracnose Disease of Chili. Huo J, et al. Mol Plant Microbe Interact, 2021 Jan. PMID 33006530
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium-dependent cysteine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calpain family cysteine protease

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_023336273.1 Reference assembly

      Range
      139681..142903 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035482578.1 → XP_035325765.1  calpain family cysteine protease [Colletotrichum scovillei]

      Status: PROVISIONAL

      Conserved Domains (2) summary
      PTZ00121
      Location:565 → 815
      PTZ00121; MAEBL; Provisional
      cl00051
      Location:143 → 442
      CysPc; Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
    Nucleotide Protein
    Heading Accession and Version

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