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    im:7143333 im:7143333 [ Danio rerio (zebrafish) ]

    Gene ID: 561230, updated on 14-Nov-2024

    Summary

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    Official Symbol
    im:7143333provided by ZNC
    Official Full Name
    im:7143333provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-041111-186
    See related
    AllianceGenome:ZFIN:ZDB-GENE-041111-186
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See im:7143333 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (741001..745675, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (775679..778333, complement)

    Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene si:dkey-7i4.24 Neighboring gene gastrula zinc finger protein XlCGF57.1-like Neighboring gene zinc finger protein 11 Neighboring gene zinc finger protein 11 Neighboring gene zinc finger protein 420-like Neighboring gene zinc finger protein 970

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    gastrula zinc finger protein XlCGF7.1
    Names
    zinc finger protein OZF-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007126.7 Reference GRCz11 Primary Assembly

      Range
      741001..745675 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021466292.2 → XP_021321967.1  gastrula zinc finger protein XlCGF7.1

      UniProtKB/TrEMBL
      A0A8M9NYD4
      Conserved Domains (2) summary
      sd00017
      Location:127 → 147
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:139 → 163
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein Strain
    Heading Accession and Version

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