si:ch211-51h9.6 si:ch211-51h9.6 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: si:ch211-51h9.6provided by ZNC
Official Full Name: si:ch211-51h9.6provided by ZNC
Primary source: ZFIN:ZDB-GENE-081104-234
See related: Ensembl:ENSDARG00000092360 AllianceGenome:ZFIN:ZDB-GENE-081104-234
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary: Predicted to be involved in negative regulation of long-term synaptic potentiation. Predicted to be located in synapse and synaptic cleft. Orthologous to human C22orf39 (chromosome 22 open reading frame 39). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

See si:ch211-51h9.6 in Genome Data Viewer

Location:: chromosome: 8

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	8	NC_007119.7 (2536280..2543327, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	8	NC_007119.6 (2477737..2484784, complement)

Chromosome 8 - NC_007119.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
involved_in negative regulation of long-term synaptic potentiation	ISS Inferred from Sequence or Structural Similarity more info
involved_in regulation of synaptic plasticity	ISS Inferred from Sequence or Structural Similarity more info

Component	Evidence Code	Pubs
located_in extracellular region	IEA Inferred from Electronic Annotation more info
located_in synapse	IEA Inferred from Electronic Annotation more info
located_in synapse	ISS Inferred from Sequence or Structural Similarity more info
located_in synaptic cleft	IEA Inferred from Electronic Annotation more info
located_in synaptic cleft	ISS Inferred from Sequence or Structural Similarity more info

General protein information

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Preferred Names: synaptic plasticity regulator PANTS

Names: UPF0545 protein C22orf39 homolog; plasticity-associated neural transcript

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001123264.1 → NP_001116736.1 synaptic plasticity regulator PANTS

Status: PROVISIONAL

Source sequence(s)

BX088526

UniProtKB/Swiss-Prot

A6H8R2, Q0P3X7

UniProtKB/TrEMBL

A0A8N1TRP2, B0S5C7

Related

ENSDARP00000115603.1, ENSDART00000134115.2

Conserved Domains (1) summary

pfam11326
Location:11 → 89

DUF3128; Protein of unknown function (DUF3128)