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    LOC575389 allene oxide synthase-lipoxygenase protein-like [ Strongylocentrotus purpuratus (purple sea urchin) ]

    Gene ID: 575389, updated on 18-Sep-2024

    Summary

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    Gene symbol
    LOC575389
    Gene description
    allene oxide synthase-lipoxygenase protein-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Strongylocentrotus purpuratus
    Lineage
    Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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    Genomic context

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    See LOC575389 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145601.1 (19729781..19775730, complement)
    Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003578948.1 (36203..48241)

    NW_022145601.1Genomic Context describing neighboring genes Neighboring gene ring finger protein 207 Neighboring gene isoprenylcysteine carboxyl methyltransferase Neighboring gene splicing regulatory glutamine/lysine-rich protein 1-like Neighboring gene coiled-coil domain containing 150

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in arachidonate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in hepoxilin biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lipid oxidation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lipoxygenase pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    allene oxide synthase-lipoxygenase protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Spur_5.0 Primary Assembly

    Genomic

    1. NW_022145601.1 Reference Spur_5.0 Primary Assembly

      Range
      19729781..19775730 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011670364.2 → XP_011668666.2  allene oxide synthase-lipoxygenase protein-like

      UniProtKB/TrEMBL
      A0A7M7HLJ8
      Conserved Domains (2) summary
      cd00113
      Location:13 → 117
      PLAT; PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and ...
      pfam00305
      Location:170 → 654
      Lipoxygenase
    Nucleotide Protein
    Heading Accession and Version

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    Research Materials