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    pps protein partner of snf [ Culex quinquefasciatus (southern house mosquito) ]

    Gene ID: 6047502, updated on 22-May-2024

    Summary

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    Gene symbol
    pps
    Gene description
    protein partner of snf
    See related
    VectorBase:CQUJHB016010; EnsemblRapid:LOC6047502
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Culex quinquefasciatus
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex
    Orthologs
    fruit fly all
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    Genomic context

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    See pps in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    100 current VPISU_Cqui_1.0_pri_paternal (GCF_015732765.1) 3 NC_051863.1 (135966201..135995339, complement)

    Chromosome 3 - NC_051863.1Genomic Context describing neighboring genes Neighboring gene N-terminal glutamine amidase tungus Neighboring gene 40S ribosomal protein S3 Neighboring gene uncharacterized LOC119769826 Neighboring gene V-type proton ATPase subunit G Neighboring gene tumor protein D52

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_051863.1 Chromosome 3 Reference VPISU_Cqui_1.0_pri_paternal Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    death-inducer obliterator 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Culex quinquefasciatus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference VPISU_Cqui_1.0_pri_paternal Primary Assembly

    Genomic

    1. NC_051863.1 Reference VPISU_Cqui_1.0_pri_paternal Primary Assembly

      Range
      135966201..135995339 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038264725.1 → XP_038120653.1  death-inducer obliterator 1

      Related
      XP_038120653.1, XM_038264725.1
      Conserved Domains (4) summary
      cd15552
      Location:854 → 903
      PHD_PHF3_like; PHD finger found in PHD finger protein 3 (PHF3), and death-inducer obliterator variants Dido1, Dido2, and Dido3
      pfam07500
      Location:1218 → 1340
      TFIIS_M; Transcription factor S-II (TFIIS), central domain
      pfam07533
      Location:1033 → 1071
      BRK; BRK domain
      pfam07744
      Location:1645 → 1786
      SPOC; SPOC domain
    Nucleotide Protein Strain
    Heading Accession and Version

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