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    Bma-pxl-1 Uncharacterized protein [ Brugia malayi ]

    Gene ID: 6103856, updated on 7-Dec-2023

    Summary

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    Gene symbol
    Bma-pxl-1
    Gene description
    Uncharacterized protein
    Locus tag
    BM_BM2456
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Brugia malayi (strain: FR3)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Spirurina; Spiruromorpha; Filarioidea; Onchocercidae; Brugia
    Old locus tag
    Bm1_44860
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    Genomic context

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    See Bma-pxl-1 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    12

    NW_025062475.1Genomic Context describing neighboring genes Neighboring gene Uncharacterized protein Neighboring gene Uncharacterized protein Neighboring gene Uncharacterized protein Neighboring gene Uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_025062475.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Draft genome of the filarial nematode parasite Brugia malayi. Ghedin E, et al. Science, 2007 Sep 21. PMID 17885136, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell-cell junction organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of integrin-mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of substrate adhesion-dependent cell spreading IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell-cell junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in focal adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Uncharacterized protein
    XP_001900435.1
    • Partially confirmed by transcript evidence
    XP_042932953.1
    • Confirmed by transcript evidence
    XP_042932954.1
    • Confirmed by transcript evidence
    XP_042932955.1
    • Confirmed by transcript evidence
    XP_042932956.1
    • Confirmed by transcript evidence
    XP_042932957.1
    • Confirmed by transcript evidence
    XP_042932958.1
    • Partially confirmed by transcript evidence
    XP_042932959.1
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_025062475.1 Reference assembly

      Range
      7800800..7809149 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_043077019.1 → XP_042932953.1  Uncharacterized protein BM_BM2456 [Brugia malayi]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0J9Y1Z4, A0A4E9F6B7
      Conserved Domains (2) summary
      cd09337
      Location:209 → 260
      LIM2_Paxillin_like; The second LIM domain of the paxillin like protein family
      cl02475
      Location:148 → 202
      LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

    2. XM_043077020.1 → XP_042932954.1  Uncharacterized protein BM_BM2456 [Brugia malayi]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A158PYD4, A0A4E9F3T6
      Conserved Domains (2) summary
      cd09337
      Location:228 → 279
      LIM2_Paxillin_like; The second LIM domain of the paxillin like protein family
      cl02475
      Location:167 → 221
      LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

    3. XM_043077021.1 → XP_042932955.1  Uncharacterized protein BM_BM2456 [Brugia malayi]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A1P6BUF0, A0A4E9F5Z1
      Conserved Domains (1) summary
      cl02475
      Location:20 → 74
      LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

    4. XM_043077022.1 → XP_042932956.1  Uncharacterized protein BM_BM2456 [Brugia malayi]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A1P6BV55, A0A4E9F423
      Conserved Domains (1) summary
      cl02475
      Location:42 → 93
      LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

    5. XM_043077023.1 → XP_042932957.1  Uncharacterized protein BM_BM2456 [Brugia malayi]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0J9Y259, A0A4E9F667
      Conserved Domains (4) summary
      cd09337
      Location:209 → 260
      LIM2_Paxillin_like; The second LIM domain of the paxillin like protein family
      cd09338
      Location:268 → 320
      LIM3_Paxillin_like; The third LIM domain of the paxillin like protein family
      cd09339
      Location:327 → 378
      LIM4_Paxillin_like; The fourth LIM domain of the Paxillin-like protein family
      cl02475
      Location:148 → 202
      LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

    6. XM_001900400.2 → XP_001900435.1  Uncharacterized protein BM_BM2456 [Brugia malayi]

      See identical proteins and their annotated locations for XP_001900435.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0K0J619, A0A4E9F5S4
      Conserved Domains (4) summary
      cd09337
      Location:228 → 279
      LIM2_Paxillin_like; The second LIM domain of the paxillin like protein family
      cd09338
      Location:287 → 339
      LIM3_Paxillin_like; The third LIM domain of the paxillin like protein family
      cd09339
      Location:346 → 397
      LIM4_Paxillin_like; The fourth LIM domain of the Paxillin-like protein family
      cl02475
      Location:167 → 221
      LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

    7. XM_043077024.1 → XP_042932958.1  Uncharacterized protein BM_BM2456 [Brugia malayi]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A1P6BV72, A0A4E9F982
      Conserved Domains (3) summary
      cd09338
      Location:140 → 192
      LIM3_Paxillin_like; The third LIM domain of the paxillin like protein family
      cd09339
      Location:199 → 250
      LIM4_Paxillin_like; The fourth LIM domain of the Paxillin-like protein family
      cl02475
      Location:20 → 74
      LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

    8. XM_043077025.1 → XP_042932959.1  Uncharacterized protein BM_BM2456 [Brugia malayi]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A1P6BUF5, A0A4E9F3Y5
      Conserved Domains (3) summary
      cd09338
      Location:101 → 153
      LIM3_Paxillin_like; The third LIM domain of the paxillin like protein family
      cd09339
      Location:160 → 211
      LIM4_Paxillin_like; The fourth LIM domain of the Paxillin-like protein family
      cl02475
      Location:42 → 93
      LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
    Nucleotide Protein
    Heading Accession and Version

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