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    Rag2L recombination activating gene 2-like [ Strongylocentrotus purpuratus (purple sea urchin) ]

    Gene ID: 613125, updated on 14-Dec-2023

    Summary

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    Gene symbol
    Rag2L
    Gene description
    recombination activating gene 2-like
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Strongylocentrotus purpuratus
    Lineage
    Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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    Genomic context

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    See Rag2L in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145614.1 (2977014..2996456, complement)
    Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577031.1 (572566..599748, complement)

    NW_022145614.1Genomic Context describing neighboring genes Neighboring gene 2,4-dienoyl-CoA reductase, mitochondrial-like Neighboring gene 2,4-dienoyl-CoA reductase, mitochondrial Neighboring gene recombination activating 1 Neighboring gene rhophilin Rho GTPase binding protein 1 Neighboring gene uncharacterized LOC115920280

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The PHD domain of the sea urchin RAG2 homolog, SpRAG2L, recognizes dimethylated lysine 4 in histone H3 tails. Wilson DR, et al. Dev Comp Immunol, 2008. PMID 18499250, Free PMC Article
    2. An ancient evolutionary origin of the Rag1/2 gene locus. Fugmann SD, et al. Proc Natl Acad Sci U S A, 2006 Mar 7. PMID 16505374, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    recombination activating protein 2-like
    Names
    Rag2-like
    recombinase-like protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033012.2 → NP_001028184.1  recombination activating protein 2-like

      See identical proteins and their annotated locations for NP_001028184.1

      Status: PROVISIONAL

      Source sequence(s)
      DQ082724
      UniProtKB/TrEMBL
      Q45ZT5
      Conserved Domains (1) summary
      cd15517
      Location:424 → 470
      PHD_TCF19_like; PHD finger found in Transcription factor 19 (TCF-19), Lysine-specific demethylase KDM5A and KDM5B, and other similar proteins

    RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Spur_5.0 Primary Assembly

    Genomic

    1. NW_022145614.1 Reference Spur_5.0 Primary Assembly

      Range
      2977014..2996456 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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