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    ybaK Cys-tRNA(Pro) deacylase [ Acinetobacter towneri ]

    Gene ID: 64223087, updated on 3-Dec-2024

    Summary

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    Gene symbol
    ybaK
    Gene description
    Cys-tRNA(Pro) deacylase
    Locus tag
    J4G44_RS08595
    Gene type
    protein coding
    Organism
    Acinetobacter towneri (strain: GX3, nat-host: porcine)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter
    Old locus tag
    J4G44_08595
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    Genomic context

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    NZ_CP071766.1Genomic Context describing neighboring genes Neighboring gene transglycosylase SLT domain-containing protein Neighboring gene Na/Pi symporter Neighboring gene IS982-like element ISAba4 family transposase Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NZ_CP071766.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Aminoacyl-tRNA substrate and enzyme backbone atoms contribute to translational quality control by YbaK. Kumar S, et al. J Phys Chem B, 2013 Apr 25. PMID 23185990, Free PMC Article
    2. An isolated class II aminoacyl-tRNA synthetase insertion domain is functional in amino acid editing. Wong FC, et al. J Biol Chem, 2003 Dec 26. PMID 14530268
    3. Cys-tRNA(Pro) editing by Haemophilus influenzae YbaK via a novel synthetase.YbaK.tRNA ternary complex. An S, et al. J Biol Chem, 2005 Oct 14. PMID 16087664
    4. Crystal structure of YbaK protein from Haemophilus influenzae (HI1434) at 1.8 A resolution: functional implications. Zhang H, et al. Proteins, 2000 Jul 1. PMID 10813833
    5. Characterization of Three Porcine Acinetobacter towneri Strains Co-Harboring tet(X3) and bla(OXA-58). Ma J, et al. Front Cell Infect Microbiol, 2020. PMID 33363052, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    Cys-tRNA(Pro) deacylase

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NZ_CP071766.1 Reference assembly

      Range
      1776018..1776485
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_004973860.1 MULTISPECIES: Cys-tRNA(Pro) deacylase [Acinetobacter]

      See identical proteins and their annotated locations for WP_004973860.1

      UniProtKB/TrEMBL
      A0A2L2LW67, A0A4R0DCF8, A0A7Y8PED7, A0A7Y8TY69, A0AAW7DXQ6
      Conserved Domains (1) summary
      cd00002
      Location:1 → 152
      YbaK_deacylase; This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) ...
    Nucleotide Protein
    Heading Accession and Version

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