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    ANKRD36BP2 ankyrin repeat domain 36B pseudogene 2 [ Homo sapiens (human) ]

    Gene ID: 645784, updated on 10-Dec-2024

    Summary

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    Official Symbol
    ANKRD36BP2provided by HGNC
    Official Full Name
    ankyrin repeat domain 36B pseudogene 2provided by HGNC
    Primary source
    HGNC:HGNC:33607
    See related
    Ensembl:ENSG00000291127 AllianceGenome:HGNC:33607
    Gene type
    pseudo
    RefSeq status
    PREDICTED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in testis (RPKM 7.3), duodenum (RPKM 5.8) and 15 other tissues See more
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    Genomic context

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    See ANKRD36BP2 in Genome Data Viewer
    Location:
    2p11.2
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (88765902..88806596)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (88774925..88815601)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (89065419..89106110)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102724805 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:88958311-88959220 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16172 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11733 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16173 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16174 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:88998185-88998359 Neighboring gene ribose 5-phosphate isomerase A Neighboring gene uncharacterized LOC105374853 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16175 Neighboring gene Sharpr-MPRA regulatory region 15514 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:89064099-89064600 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11734 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11735 Neighboring gene Sharpr-MPRA regulatory region 6437 Neighboring gene microRNA 4436a Neighboring gene MALL pseudogene 2 Neighboring gene uncharacterized LOC105374854

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Clone Names

    • FLJ40330, DKFZp434J1630, DKFZp686E1246, DKFZp686O04183

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_015424.1 RNA Sequence

      Status: PREDICTED

      Source sequence(s)
      BC031698
      Related
      ENST00000393515.9

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      88765902..88806596
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      88774925..88815601
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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