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    LOC646813 DExH-box helicase 9 pseudogene [ Homo sapiens (human) ]

    Gene ID: 646813, updated on 10-Dec-2024

    Summary

    Gene symbol
    LOC646813
    Gene description
    DExH-box helicase 9 pseudogene
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in bone marrow (RPKM 2.5), thyroid (RPKM 1.6) and 25 other tissues See more
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    Genomic context

    See LOC646813 in Genome Data Viewer
    Location:
    11p11.12
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (50409147..50420631)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (50586034..50597478)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (50368318..50379802)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene septin 7 pseudogene 11 Neighboring gene long intergenic non-protein coding RNA 2750 Neighboring gene general transcription factor IIi pseudogene 15 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:50686767-50687507 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:50687754-50688310 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:50756088-50756715 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:50755325-50755944 Neighboring gene NANOG hESC enhancer GRCh37_chr11:50754605-50755126 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:51585464-51585974 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr11:51568233-51568850 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:51569470-51569992 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:51571860-51572381 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr11:51573425-51573946 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr11:51573947-51574468 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:51579187-51579881 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:51579882-51580576 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:51580577-51581271 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:51582329-51582850 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:51582851-51583371 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:51583372-51583894 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:51586485-51586995 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:51586996-51587505 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:51588681-51589514 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:51590762-51591615 Neighboring gene olfactory receptor family 4 subfamily C member 50 pseudogene Neighboring gene olfactory receptor family 4 subfamily C member 46

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    General gene information

    Markers

    Other Names

    • DEAH (Asp-Glu-Ala-His) box helicase 9 pseudogene
    • DEAH (Asp-Glu-Ala-His) box polypeptide 9 pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_024504.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC024405

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      50409147..50420631
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      50586034..50597478
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)