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    Rbp6 RNA-binding protein 6 [ Drosophila ananassae ]

    Gene ID: 6507034, updated on 23-May-2024

    Summary

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    Gene symbol
    Rbp6
    Gene description
    RNA-binding protein 6
    Locus tag
    Dana_GF24401
    See related
    EnsemblRapid:LOC6507034
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Drosophila ananassae
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    GF24401; GF24401-PA; GF24401-PB; GF24401-PC; GF24401-PD; GF24401-PE
    Orthologs
    fruit fly all
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    Genomic context

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    See Rbp6 in Genome Data Viewer
    Location:
    chromosome: 2R
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    102 current ASM1763931v2 (GCF_017639315.1) 2R NC_057928.1 (19717466..19886179)
    101 previous assembly DanaRS2.1 (GCF_003285975.2) Unplaced Scaffold NW_022473439.1 (7163894..7325819, complement)

    Chromosome 2R - NC_057928.1Genomic Context describing neighboring genes Neighboring gene cold shock domain-containing Unr Neighboring gene AFG3 like matrix AAA peptidase subunit 2 Neighboring gene uncharacterized LOC123257043 Neighboring gene adenylate kinase Neighboring gene 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase Neighboring gene rogdi atypical leucine zipper

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA-binding protein Musashi homolog Rbp6; splicing factor 3B subunit 4
    Names
    Dana\GF24401
    Dana\GF24401-PA
    Dana\GF24401-PB
    Dana\GF24401-PC
    Dana\GF24401-PD
    Dana\GF24401-PE
    dana_GLEANR_9125

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Drosophila ananassae Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1763931v2

    Genomic

    1. NC_057928.1 Reference ASM1763931v2

      Range
      19717466..19886179
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044714409.1 → XP_044570344.1  splicing factor 3B subunit 4 isoform X1

      UniProtKB/TrEMBL
      A0A0N8P0U4
      Related
      XP_044570344.1, XM_044714409.1
      Conserved Domains (2) summary
      cd12323
      Location:120 → 193
      RRM2_MSI; RNA recognition motif 2 (RRM2) found in RNA-binding protein Musashi homologs Musashi-1, Musashi-2 and similar proteins
      cd12576
      Location:31 → 106
      RRM1_MSI; RNA recognition motif 1 (RRM1) found in RNA-binding protein Musashi homolog Musashi-1, Musashi-2 and similar proteins

    2. XM_044714410.1 → XP_044570345.1  splicing factor 3B subunit 4 isoform X1

      UniProtKB/TrEMBL
      A0A0N8P0U4
      Related
      XP_044570345.1, XM_044714410.1
      Conserved Domains (2) summary
      cd12323
      Location:120 → 193
      RRM2_MSI; RNA recognition motif 2 (RRM2) found in RNA-binding protein Musashi homologs Musashi-1, Musashi-2 and similar proteins
      cd12576
      Location:31 → 106
      RRM1_MSI; RNA recognition motif 1 (RRM1) found in RNA-binding protein Musashi homolog Musashi-1, Musashi-2 and similar proteins

    3. XM_014909555.3 → XP_014765041.1  splicing factor 3B subunit 4 isoform X1

      UniProtKB/TrEMBL
      A0A0N8P0U4
      Related
      XP_014765041.1, XM_014909555.3
      Conserved Domains (2) summary
      cd12323
      Location:120 → 193
      RRM2_MSI; RNA recognition motif 2 (RRM2) found in RNA-binding protein Musashi homologs Musashi-1, Musashi-2 and similar proteins
      cd12576
      Location:31 → 106
      RRM1_MSI; RNA recognition motif 1 (RRM1) found in RNA-binding protein Musashi homolog Musashi-1, Musashi-2 and similar proteins

    4. XM_044714411.1 → XP_044570346.1  RNA-binding protein Musashi homolog Rbp6 isoform X3

      Related
      XP_044570346.1, XM_044714411.1
      Conserved Domains (2) summary
      cd12323
      Location:120 → 193
      RRM2_MSI; RNA recognition motif 2 (RRM2) found in RNA-binding protein Musashi homologs Musashi-1, Musashi-2 and similar proteins
      cd12576
      Location:31 → 106
      RRM1_MSI; RNA recognition motif 1 (RRM1) found in RNA-binding protein Musashi homolog Musashi-1, Musashi-2 and similar proteins

    5. XM_014909554.3 → XP_014765040.1  RNA-binding protein Musashi homolog Rbp6 isoform X4

      UniProtKB/TrEMBL
      A0A0P8XTP0
      Related
      XP_014765040.1, XM_014909554.3
      Conserved Domains (2) summary
      cd12323
      Location:120 → 193
      RRM2_MSI; RNA recognition motif 2 in RNA-binding protein Musashi homologs Musashi-1, Musashi-2 and similar proteins
      cd12576
      Location:32 → 106
      RRM1_MSI; RNA recognition motif 1 in RNA-binding protein Musashi homolog Musashi-1, Musashi-2 and similar proteins

    6. XM_014909557.3 → XP_014765043.1  RNA-binding protein Musashi homolog Rbp6 isoform X2

      UniProtKB/TrEMBL
      A0A0P8YGM5
      Related
      XP_014765043.1, XM_014909557.3
      Conserved Domains (3) summary
      TIGR01628
      Location:44 → 328
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      cd12323
      Location:120 → 193
      RRM2_MSI; RNA recognition motif 2 (RRM2) found in RNA-binding protein Musashi homologs Musashi-1, Musashi-2 and similar proteins
      cd12576
      Location:31 → 106
      RRM1_MSI; RNA recognition motif 1 (RRM1) found in RNA-binding protein Musashi homolog Musashi-1, Musashi-2 and similar proteins

    7. XM_014909556.3 → XP_014765042.1  RNA-binding protein Musashi homolog Rbp6 isoform X5

      UniProtKB/TrEMBL
      A0A0P8XU17
      Related
      XP_014765042.1, XM_014909556.3
      Conserved Domains (2) summary
      TIGR01628
      Location:8 → 215
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      cd12323
      Location:7 → 80
      RRM2_MSI; RNA recognition motif 2 (RRM2) found in RNA-binding protein Musashi homologs Musashi-1, Musashi-2 and similar proteins

    RNA

    1. XR_006506970.1 RNA Sequence

      Related
      XR_006506970.1
    Nucleotide Protein Strain
    Heading Accession and Version

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