U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC6533848 autophagy protein 12-like [ Drosophila yakuba ]

    Gene ID: 6533848, updated on 10-May-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC6533848
    Gene description
    autophagy protein 12-like
    Locus tag
    Dyak_GE21887
    See related
    EnsemblRapid:LOC6533848
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Drosophila yakuba
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    GE21887; GE21887-PB
    Orthologs
    fruit fly all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC6533848 in Genome Data Viewer
    Location:
    chromosome: 3L
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current Prin_Dyak_Tai18E2_2.1 (GCF_016746365.2) 3L NC_052529.2 (12268170..12268792)
    101 previous assembly Prin_Dyak_Tai18E2_2.0 (GCF_016746365.1) 3L NC_052529.1 (12268179..12268810)

    Chromosome 3L - NC_052529.2Genomic Context describing neighboring genes Neighboring gene Larval serum protein 2 Neighboring gene differentially expressed in FDCP 8 homolog Neighboring gene protein KRI1 homolog Neighboring gene NADH dehydrogenase (ubiquinone) SGDH subunit Neighboring gene Rho GTPase activating protein at 68F

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in C-terminal protein lipidation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in autophagosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in autophagy of mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nucleophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Atg12-Atg5-Atg16 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in phagophore assembly site membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    autophagy protein 12-like
    Names
    Dyak\GE21887
    Dyak\GE21887-PB
    dyak_GLEANR_5610

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Drosophila yakuba Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Prin_Dyak_Tai18E2_2.1 Primary Assembly

    Genomic

    1. NC_052529.2 Reference Prin_Dyak_Tai18E2_2.1 Primary Assembly

      Range
      12268170..12268792
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015194799.3 → XP_015050285.1  autophagy protein 12-like

      UniProtKB/TrEMBL
      A0A0R1DXC9
      Related
      XP_015050285.1, XM_015194799.3
      Conserved Domains (1) summary
      pfam04110
      Location:25 → 111
      APG12; Ubiquitin-like autophagy protein Apg12
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials