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    svp COUP transcription factor 2 [ Drosophila erecta ]

    Gene ID: 6553795, updated on 23-May-2024

    Summary

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    Gene symbol
    svp
    Gene description
    COUP transcription factor 2
    Locus tag
    Dere_GG18706
    See related
    EnsemblRapid:LOC6553795
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Drosophila erecta
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    GG18706; GG18706-PA; GG18706-PB
    Orthologs
    fruit fly all
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    Genomic context

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    See svp in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    101 current DereRS2 (GCF_003286155.1) Unplaced Scaffold NW_020825194.1 (15011547..15033633)

    NW_020825194.1Genomic Context describing neighboring genes Neighboring gene nucleolar protein 3 Neighboring gene Seminal fluid protein 87B Neighboring gene agglutinin-like protein 5 Neighboring gene transfer RNA threonine (anticodon UGU)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_020825194 Unplaced Scaffold Reference DereRS2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anatomical structure development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    steroid receptor seven-up; steroid receptor seven-up, isoforms B/C
    Names
    Dere\GG18706
    Dere\GG18706-PA
    Dere\GG18706-PB
    dere_GLEANR_352

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Drosophila erecta Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference DereRS2

    Genomic

    1. NW_020825194.1 Reference DereRS2

      Range
      15011547..15033633
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015154600.2 → XP_015010086.1  steroid receptor seven-up isoform X1

      Related
      XP_015010086.1, XM_015154600.2
      Conserved Domains (2) summary
      cd06958
      Location:200 → 272
      NR_DBD_COUP_TF; DNA-binding domain of chicken ovalbumin upstream promoter transcription factors (COUP-TFs) is composed of two C4-type zinc fingers
      cl11397
      Location:307 → 452
      NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

    2. XM_001980407.3 → XP_001980443.1  steroid receptor seven-up, isoforms B/C isoform X2

      See identical proteins and their annotated locations for XP_001980443.1

      UniProtKB/TrEMBL
      B3P1E2
      Related
      XP_001980443.1, XM_001980407.3
      Conserved Domains (2) summary
      cd06948
      Location:307 → 542
      NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family
      cd06958
      Location:200 → 272
      NR_DBD_COUP_TF; DNA-binding domain of chicken ovalbumin upstream promoter transcription factors (COUP-TFs) is composed of two C4-type zinc fingers
    Nucleotide Protein
    Heading Accession and Version

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    Research Materials