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    LOC661050 UPF0160 protein [ Tribolium castaneum (red flour beetle) ]

    Gene ID: 661050, updated on 10-May-2024

    Summary

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    Gene symbol
    LOC661050
    Gene description
    UPF0160 protein
    Locus tag
    TcasGA2_TC013284
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tribolium castaneum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC661050 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 3 NC_087396.1 (18602221..18604421, complement)
    103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG7 NC_007422.5 (6129956..6132127)

    Chromosome 3 - NC_087396.1Genomic Context describing neighboring genes Neighboring gene transcriptional-regulating factor 1 Neighboring gene uncharacterized LOC107398192 Neighboring gene uncharacterized LOC103314713 Neighboring gene uncharacterized LOC107397588 Neighboring gene NADPH oxidase Neighboring gene uncharacterized LOC107398167

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
    2. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    MYG1 protein
    Names
    AUGUSTUS-3.0.2_13284
    GLEAN_13284
    UPF0160 protein-like Protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference icTriCast1.1 Primary Assembly

    Genomic

    1. NC_087396.1 Reference icTriCast1.1 Primary Assembly

      Range
      18602221..18604421 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_967239.4 → XP_972332.2  MYG1 protein

      UniProtKB/TrEMBL
      D6WP32
      Conserved Domains (1) summary
      pfam03690
      Location:40 → 365
      UPF0160; uncharacterized protein family (UPF0160)
    Nucleotide Protein Strain
    Heading Accession and Version

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