U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    KNZ77_RS11180 sigma 54-interacting transcriptional regulator [ Clostridioides difficile ]

    Gene ID: 66354674, updated on 15-Dec-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    KNZ77_RS11180
    Gene description
    sigma 54-interacting transcriptional regulator
    Locus tag
    KNZ77_RS11180
    Gene type
    protein coding
    Organism
    Clostridioides difficile (strain: S-0253, nat-host: Homo sapiens)
    Lineage
    Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
    Old locus tag
    KNZ77_11180
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help

    NZ_CP076401.1Genomic Context describing neighboring genes Neighboring gene PTS sugar transporter subunit IIB Neighboring gene PTS sugar transporter subunit IIA Neighboring gene DUF3284 domain-containing protein Neighboring gene BlaI/MecI/CopY family transcriptional regulator

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NZ_CP076401.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Binding of transcriptional activators to sigma 54 in the presence of the transition state analog ADP-aluminum fluoride: insights into activator mechanochemical action. Chaney M, et al. Genes Dev, 2001 Sep 1. PMID 11544185, Free PMC Article
    2. Domain architectures of sigma54-dependent transcriptional activators. Studholme DJ, et al. J Bacteriol, 2003 Mar. PMID 12618438, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General protein information

    Go to the top of the page Help
    Preferred Names
    sigma 54-interacting transcriptional regulator

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NZ_CP076401.1 Reference assembly

      Range
      2439122..2442025 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_004454557.1 sigma 54-interacting transcriptional regulator [Clostridioides difficile]

      See identical proteins and their annotated locations for WP_004454557.1

      Conserved Domains (4) summary
      COG1221
      Location:113 → 457
      PspF; Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms]
      COG1508
      Location:2 → 52
      RpoN; DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog [Transcription]
      COG3933
      Location:487 → 839
      LevR; Transcriptional regulatory protein LevR, contains PRD, AAA+ and EIIA domains [Transcription]
      pfam00359
      Location:830 → 962
      PTS_EIIA_2; Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
    Nucleotide Protein
    Heading Accession and Version