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    Gm44505 predicted readthrough transcript (NMD candidate), 44505 [ Mus musculus (house mouse) ]

    Gene ID: 664779, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Gm44505provided by MGI
    Official Full Name
    predicted readthrough transcript (NMD candidate), 44505provided by MGI
    Primary source
    MGI:MGI:3845910
    See related
    Ensembl:ENSMUSG00000118491 AllianceGenome:MGI:3845910
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Pzf; Cntf; Zfp91; Zfp-91; Zfp91Cntf; Zfp91-Cntf
    Summary
    This gene represents a read-through transcript composed of Zfp91 and Cntf sequences. This transcript is thought to be non-coding because it would be subject to nonsense-mediated mRNA decay (NMD). Read-through transcription of Zfp91 and Cntf has been observed in both human and mouse. [provided by RefSeq, Aug 2008]
    Expression
    Ubiquitous expression in testis adult (RPKM 13.9), thymus adult (RPKM 11.8) and 28 other tissues See more
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    Genomic context

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    See Gm44505 in Genome Data Viewer
    Location:
    19 A; 19 8.73 cM
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (12740892..12773487, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (12763528..12796123, complement)

    Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene olfactory receptor family 5 subfamily B member 95 Neighboring gene kidney expressed gene 1 Neighboring gene crumbs homolog 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_45598 Neighboring gene ciliary neurotrophic factor Neighboring gene zinc finger protein 91 Neighboring gene STARR-positive B cell enhancer ABC_E11024 Neighboring gene STARR-positive B cell enhancer ABC_E4268 Neighboring gene CapStarr-seq enhancer MGSCv37_chr19:12870708-12870906 Neighboring gene CapStarr-seq enhancer MGSCv37_chr19:12871167-12871368 Neighboring gene STARR-positive B cell enhancer ABC_E8742 Neighboring gene STARR-positive B cell enhancer ABC_E7636 Neighboring gene leupaxin Neighboring gene ribosomal protein lateral stalk subunit P1, retrotransposed Neighboring gene olfactory receptor family 5 subfamily B member 21

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A widely expressed novel C2H2 zinc-finger protein with multiple consensus phosphorylation sites is conserved in mouse and man. Saotome Y, et al. Gene, 1995 Jan 23. PMID 7835706
    2. BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. Magdaleno S, et al. PLoS Biol, 2006 Apr. PMID 16602821, Free PMC Article
    3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Readthrough Gm44505

    Included genes: Cntf, Zfp91

    Other Names

    • Ciliary neurotrophic factor
    • E3 ubiquitin-protein ligase ZFP91
    • Penta Zf protein
    • RING-type E3 ubiquitin transferase ZFP91
    • Zfp91-Cntf readthrough transcript (NMD candidate)
    • Zinc finger protein 91 homolog
    • Zinc finger protein PZF
    • sequence U05342
    • zinc finger protein 91, ciliary neurotrophic factor transcription unit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_024093.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC150901, CJ114211, U05342
      Related
      ENSMUST00000142247.8

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000085.7 Reference GRCm39 C57BL/6J

      Range
      12740892..12773487 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001039718.1: Suppressed sequence

      Description
      NM_001039718.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
    Nucleotide Protein Strain
    Heading Accession and Version

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