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    LOC6725953 gamma-butyrobetaine dioxygenase [ Drosophila simulans ]

    Gene ID: 6725953, updated on 10-May-2024

    Summary

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    Gene symbol
    LOC6725953
    Gene description
    gamma-butyrobetaine dioxygenase
    Locus tag
    Dsimw501_GD17176
    See related
    EnsemblRapid:LOC6725953
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Drosophila simulans
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    GD17176; GD17176-PB
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC6725953 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    103 current Prin_Dsim_3.1 (GCF_016746395.2) X NC_052525.2 (14117276..14118679)
    102 previous assembly Prin_Dsim_3.0 (GCF_016746395.1) X NC_052525.1 (14117328..14118730)

    Chromosome X - NC_052525.2Genomic Context describing neighboring genes Neighboring gene L-type amino acid transporter sobremesa Neighboring gene netrin-A Neighboring gene netrin-B Neighboring gene putative nuclease HARBI1 Neighboring gene uncharacterized LOC6725955

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carnitine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    gamma-butyrobetaine dioxygenase
    Names
    Dsim\GD17176
    Dsim\GD17176-PB
    dsim_GLEANR_17327

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Drosophila simulans Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Prin_Dsim_3.1

    Genomic

    1. NC_052525.2 Reference Prin_Dsim_3.1

      Range
      14117276..14118679
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002106900.4 → XP_002106936.2  gamma-butyrobetaine dioxygenase

      UniProtKB/TrEMBL
      B4R4V1
      Related
      XP_002106936.2, XM_002106900.4
      Conserved Domains (3) summary
      cd00250
      Location:127 → 395
      CAS_like; Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases ...
      TIGR02409
      Location:49 → 405
      carnitine_bodg; gamma-butyrobetaine hydroxylase
      cl01414
      Location:48 → 114
      DUF971; Protein of unknown function (DUF971)
    Nucleotide Protein Strain
    Heading Accession and Version

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