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    Rps25l3 ribosomal protein S25 like 3 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 685085, updated on 4-Jan-2025

    Summary

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    Official Symbol
    Rps25l3provided by RGD
    Official Full Name
    ribosomal protein S25 like 3provided by RGD
    Primary source
    RGD:1583218
    See related
    EnsemblRapid:ENSRNOG00000062325 AllianceGenome:RGD:1583218
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be a structural constituent of ribosome. Predicted to be part of cytosolic small ribosomal subunit. [provided by Alliance of Genome Resources, Jan 2025]
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    Genomic context

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    See Rps25l3 in Genome Data Viewer
    Location:
    4q34
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (122491009..122491527, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (120933765..120934259, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (120040765..120041256, complement)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA29 Neighboring gene uncharacterized LOC120102335 Neighboring gene eukaryotic elongation factor, selenocysteine-tRNA-specific Neighboring gene RuvB-like AAA ATPase 1 Neighboring gene SEC61 translocon subunit alpha 1 Neighboring gene kelch repeat and BTB domain containing 12

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of cytosolic small ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    similar to 40S ribosomal protein S25; small ribosomal subunit protein eS25-like
    Names
    40S ribosomal protein S25-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001431882.1 → NP_001418811.1  similar to 40S ribosomal protein S25

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000004
      UniProtKB/TrEMBL
      F1M6F4, M0R763

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      122491009..122491527 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039108732.2 → XP_038964660.1  small ribosomal subunit protein eS25-like

      Related
      ENSRNOP00000090300.1, ENSRNOT00000099455.2
      Conserved Domains (1) summary
      pfam03297
      Location:19 → 111
      Ribosomal_S25; S25 ribosomal protein
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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