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    CMU_025200 clathrin heavy chain 1, putative [ Cryptosporidium muris RN66 ]

    Gene ID: 6995013, updated on 17-May-2024

    Summary

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    Gene symbol
    CMU_025200
    Gene description
    clathrin heavy chain 1, putative
    Locus tag
    CMU_025200
    See related
    CryptoDB:CMU_025200; VEuPathDB:CMU_025200
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Cryptosporidium muris RN66 (strain: RN66)
    Lineage
    Eukaryota; Sar; Alveolata; Apicomplexa; Conoidasida; Coccidia; Eucoccidiorida; Eimeriorina; Cryptosporidiidae; Cryptosporidium
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    Genomic context

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    See CMU_025200 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    1

    NW_002196571.1Genomic Context describing neighboring genes Neighboring gene Sec23/Sec24 zinc finger domain-containing protein Neighboring gene uncharacterized protein Neighboring gene centrin protein, putative Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_002196571.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables clathrin light chain binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural molecule activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in receptor-mediated endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of clathrin coat of coated pit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of clathrin coat of trans-Golgi network vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of clathrin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    clathrin heavy chain 1, putative
    XP_002139863.1
    • encoded by transcript CMU_025200A
      weak similarity to SP:Q00610: Clathrin heavy chain 1 (CLH-17). taxon:9606 {Homo apiens;}

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_002196571.1 Reference assembly

      Range
      607041..613058 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002139827.1 → XP_002139863.1  clathrin heavy chain 1, putative [Cryptosporidium muris RN66]

      See identical proteins and their annotated locations for XP_002139863.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      B6AAW2
      Conserved Domains (3) summary
      smart00299
      Location:1046 → 1168
      CLH; Clathrin heavy chain repeat homology
      pfam00637
      Location:1383 → 1523
      Clathrin; Region in Clathrin and VPS
      pfam13838
      Location:409 → 459
      Clathrin_H_link; Clathrin-H-link
    Nucleotide Protein
    Heading Accession and Version

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    Research Materials