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    Gpatch2l G patch domain containing 2 like [ Mus musculus (house mouse) ]

    Gene ID: 70373, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Gpatch2lprovided by MGI
    Official Full Name
    G patch domain containing 2 likeprovided by MGI
    Primary source
    MGI:MGI:1917623
    See related
    Ensembl:ENSMUSG00000021254 AllianceGenome:MGI:1917623
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Kiaa1152; 1700020O03Rik; 4732487G21Rik; A630090I05Rik
    Summary
    Predicted to be active in nucleus. Is expressed in cerebral cortex subventricular zone; cerebral cortex ventricular layer; and cortical plate. Orthologous to human GPATCH2L (G-patch domain containing 2 like). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in CNS E18 (RPKM 5.0), CNS E14 (RPKM 4.5) and 28 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Gpatch2l in Genome Data Viewer
    Location:
    12 D2; 12 40.36 cM
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (86288569..86341439)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (86241795..86294657)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene intraflagellar transport 43 Neighboring gene STARR-seq mESC enhancer starr_32794 Neighboring gene predicted gene 805 Neighboring gene predicted gene, 32473 Neighboring gene STARR-seq mESC enhancer starr_32801 Neighboring gene STARR-positive B cell enhancer ABC_E742 Neighboring gene STARR-positive B cell enhancer ABC_E4037 Neighboring gene predicted gene, 40481 Neighboring gene STARR-seq mESC enhancer starr_32803 Neighboring gene predicted gene, 32666 Neighboring gene predicted gene, 40483 Neighboring gene estrogen related receptor, beta

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Functional genomic landscape of cancer-intrinsic evasion of killing by T cells. Lawson KA, et al. Nature, 2020 Oct. PMID 32968282, Free PMC Article
    2. Prediction of the coding sequences of mouse homologues of KIAA gene: III. the complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, et al. DNA Res, 2003 Aug 31. PMID 14621295
    3. Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Piao Y, et al. Genome Res, 2001 Sep. PMID 11544199, Free PMC Article
    4. Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Bedogni F, et al. Front Mol Neurosci, 2021. PMID 34321999, Free PMC Article
    5. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article

    See all (20) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 
    • Targeted (2) 

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    G patch domain-containing protein 2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001324488.1 → NP_001311417.1  G patch domain-containing protein 2-like isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK031712, AK129299, BE685832, BY146148
      Consensus CDS
      CCDS88376.1
      UniProtKB/TrEMBL
      Q3UGI2
      Related
      ENSMUSP00000065858.6, ENSMUST00000071106.6

    2. NM_027405.3 → NP_081681.2  G patch domain-containing protein 2-like isoform 1

      See identical proteins and their annotated locations for NP_081681.2

      Status: VALIDATED

      Source sequence(s)
      BC058256, BY146148
      Consensus CDS
      CCDS26065.1
      UniProtKB/Swiss-Prot
      Q6PE65, Q6ZPW9, Q8CD08, Q9DA49
      UniProtKB/TrEMBL
      Q3UGI2
      Related
      ENSMUSP00000152284.2, ENSMUST00000221368.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      86288569..86341439
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006516219.4 → XP_006516282.1  G patch domain-containing protein 2-like isoform X1

      UniProtKB/TrEMBL
      Q3UGI2

    2. XM_006516220.5 → XP_006516283.1  G patch domain-containing protein 2-like isoform X2

      UniProtKB/TrEMBL
      Q3UGI2

    3. XM_036157609.1 → XP_036013502.1  G patch domain-containing protein 2-like isoform X4

    4. XM_006516222.4 → XP_006516285.1  G patch domain-containing protein 2-like isoform X5

    5. XM_030246903.2 → XP_030102763.1  G patch domain-containing protein 2-like isoform X3

    6. XM_017315181.3 → XP_017170670.1  G patch domain-containing protein 2-like isoform X6

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6PE65.1 GenPept UniProtKB/Swiss-Prot:Q6PE65

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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