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    SON SON DNA and RNA binding protein [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 704712, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SONprovided by VGNC
    Official Full Name
    SON DNA and RNA binding proteinprovided by VGNC
    Primary source
    VGNC:VGNC:77689
    See related
    Ensembl:ENSMMUG00000005511
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SON in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 3 NC_041756.1 (12974977..13008791, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 3 NC_027895.1 (13112608..13146275, complement)

    Chromosome 3 - NC_041756.1Genomic Context describing neighboring genes Neighboring gene intersectin 1 Neighboring gene crystallin zeta like 1 Neighboring gene DNA replication fork stabilization factor DONSON Neighboring gene uncharacterized LOC106997268 Neighboring gene phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase Neighboring gene DnaJ heat shock protein family (Hsp40) member C28

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein SON
    Names
    SON DNA binding protein
    protein SON-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041756.1 Reference Mmul_10 Primary Assembly

      Range
      12974977..13008791 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015132962.2 → XP_014988448.2  protein SON isoform X1

      UniProtKB/TrEMBL
      A0A5F7ZLX6
      Conserved Domains (7) summary
      smart00358
      Location:2372 → 2440
      DSRM; Double-stranded RNA binding motif
      PHA03247
      Location:159 → 460
      PHA03247; large tegument protein UL36; Provisional
      PHA03379
      Location:340 → 673
      PHA03379; EBNA-3A; Provisional
      PRK10811
      Location:1220 → 1381
      rne; ribonuclease E; Reviewed
      pfam08430
      Location:1016 → 1141
      Forkhead_N; Forkhead N-terminal region
      NF000535
      Location:730 → 903
      MSCRAMM_SdrC; MSCRAMM family adhesin SdrC
      pfam01585
      Location:2305 → 2349
      G-patch; G-patch domain

    2. XM_015132963.2 → XP_014988449.2  protein SON isoform X2

      UniProtKB/TrEMBL
      A0A5F7ZLX6
      Related
      ENSMMUP00000007285.4, ENSMMUT00000007755.4
      Conserved Domains (7) summary
      PHA03247
      Location:159 → 460
      PHA03247; large tegument protein UL36; Provisional
      PHA03379
      Location:340 → 673
      PHA03379; EBNA-3A; Provisional
      PRK10811
      Location:1220 → 1381
      rne; ribonuclease E; Reviewed
      cd00048
      Location:2371 → 2408
      DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...
      pfam08430
      Location:1016 → 1141
      Forkhead_N; Forkhead N-terminal region
      NF000535
      Location:730 → 903
      MSCRAMM_SdrC; MSCRAMM family adhesin SdrC
      pfam01585
      Location:2305 → 2349
      G-patch; G-patch domain

    3. XM_015132965.2 → XP_014988451.2  protein SON isoform X3

      UniProtKB/TrEMBL
      A0A5F7ZFU1, A0A5F7ZLX6
      Related
      ENSMMUP00000063495.1, ENSMMUT00000107120.1
      Conserved Domains (5) summary
      PHA03247
      Location:159 → 460
      PHA03247; large tegument protein UL36; Provisional
      PHA03379
      Location:340 → 673
      PHA03379; EBNA-3A; Provisional
      PRK10811
      Location:1220 → 1381
      rne; ribonuclease E; Reviewed
      pfam08430
      Location:1016 → 1141
      Forkhead_N; Forkhead N-terminal region
      NF000535
      Location:730 → 903
      MSCRAMM_SdrC; MSCRAMM family adhesin SdrC

    4. XM_015132966.2 → XP_014988452.2  protein SON isoform X4

      UniProtKB/TrEMBL
      A0A5F7ZLX6
      Conserved Domains (5) summary
      PHA03247
      Location:159 → 460
      PHA03247; large tegument protein UL36; Provisional
      PHA03379
      Location:340 → 673
      PHA03379; EBNA-3A; Provisional
      PRK10811
      Location:1220 → 1381
      rne; ribonuclease E; Reviewed
      pfam08430
      Location:1016 → 1141
      Forkhead_N; Forkhead N-terminal region
      NF000535
      Location:730 → 903
      MSCRAMM_SdrC; MSCRAMM family adhesin SdrC

    RNA

    1. XR_001443401.2 RNA Sequence

    2. XR_003727893.1 RNA Sequence

    3. XR_001443402.2 RNA Sequence

    4. XR_003727894.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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