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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_047083.1 RefSeqGene
- Range
-
6284..18593
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001252607.2 → NP_001239536.1 thrombospondin-3 isoform 2 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks an in-frame exon in the coding region, compared to variant 1. The encoded isoform (2) is shorter, compared to isoform 1.
- Source sequence(s)
-
AC234582, AK314337, BC018786
- Consensus CDS
-
CCDS72937.1
- UniProtKB/TrEMBL
- F5H4Z8, Q2HIZ0
- Related
- ENSP00000444792.2, ENST00000541576.5
- Conserved Domains (9) summary
-
- smart00210
Location:23 → 193
- TSPN; Thrombospondin N-terminal -like domains
- cd00054
Location:307 → 342
- EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
- sd00001
Location:519 → 541
- TSP3; TSP3 repeat_short [structural motif]
- sd00002
Location:542 → 577
- TSP3; TSP3 repeat_long [structural motif]
- sd00003
Location:449 → 482
- TSP3_1C; TSP3 repeat_1C [structural motif]
- pfam02412
Location:543 → 577
- TSP_3; Thrombospondin type 3 repeat
- pfam05735
Location:732 → 929
- TSP_C; Thrombospondin C-terminal region
- pfam12947
Location:369 → 398
- EGF_3; EGF domain
- cd16079
Location:218 → 260
- TSP-3cc; Coiled coil region of thrombospondin-3 (TSP-3)
-
NM_001252608.2 → NP_001239537.1 thrombospondin-3 isoform 3 precursor
See identical proteins and their annotated locations for NP_001239537.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) lacks two in-frame exons in the coding region, compared to variant 1. The encoded isoform (3) is shorter, compared to isoform 1.
- Source sequence(s)
-
AK298592, BC018786
- Consensus CDS
-
CCDS58034.1
- UniProtKB/TrEMBL
-
Q2HIZ0
- Related
- ENSP00000392207.2, ENST00000457183.6
- Conserved Domains (9) summary
-
- cd00054
Location:196 → 231
- EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
- sd00001
Location:408 → 430
- TSP3; TSP3 repeat_short [structural motif]
- sd00002
Location:431 → 466
- TSP3; TSP3 repeat_long [structural motif]
- sd00003
Location:338 → 371
- TSP3_1C; TSP3 repeat_1C [structural motif]
- pfam02412
Location:432 → 466
- TSP_3; Thrombospondin type 3 repeat
- pfam05735
Location:621 → 818
- TSP_C; Thrombospondin C-terminal region
- pfam12947
Location:258 → 287
- EGF_3; EGF domain
- cd16079
Location:107 → 149
- TSP-3cc; Coiled coil region of thrombospondin-3 (TSP-3)
- cl22861
Location:23 → 118
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
-
NM_001407487.1 → NP_001394416.1 thrombospondin-3 isoform 4 precursor
Status: REVIEWED
- Source sequence(s)
-
AC234582
- UniProtKB/TrEMBL
-
Q2HIZ0
-
NM_001407488.1 → NP_001394417.1 thrombospondin-3 isoform 5 precursor
Status: REVIEWED
- Source sequence(s)
-
AC234582
- UniProtKB/TrEMBL
-
Q2HIZ0
-
NM_001407490.1 → NP_001394419.1 thrombospondin-3 isoform 6
Status: REVIEWED
- Source sequence(s)
-
AC234582
- UniProtKB/TrEMBL
-
Q2HIZ0
-
NM_001407554.1 → NP_001394483.1 thrombospondin-3 isoform 7 precursor
Status: REVIEWED
- Source sequence(s)
-
AC234582
- UniProtKB/TrEMBL
-
Q2HIZ0
-
NM_001407555.1 → NP_001394484.1 thrombospondin-3 isoform 8 precursor
Status: REVIEWED
- Source sequence(s)
-
AC234582
- UniProtKB/TrEMBL
-
Q2HIZ0
-
NM_001407556.1 → NP_001394485.1 thrombospondin-3 isoform 9
Status: REVIEWED
- Source sequence(s)
-
AC234582
- UniProtKB/TrEMBL
-
Q2HIZ0
-
NM_001407557.1 → NP_001394486.1 thrombospondin-3 isoform 9
Status: REVIEWED
- Source sequence(s)
-
AC234582
- UniProtKB/TrEMBL
-
Q2HIZ0
-
NM_001407558.1 → NP_001394487.1 thrombospondin-3 isoform 10
Status: REVIEWED
- Source sequence(s)
-
AC234582
- UniProtKB/TrEMBL
-
Q2HIZ0
-
NM_001407559.1 → NP_001394488.1 thrombospondin-3 isoform 11
Status: REVIEWED
- Source sequence(s)
-
AC234582
- UniProtKB/TrEMBL
-
B3KQE1
-
NM_001407560.1 → NP_001394489.1 thrombospondin-3 isoform 12
Status: REVIEWED
- Source sequence(s)
-
AC234582
- UniProtKB/TrEMBL
-
B3KQE1
-
NM_001407561.1 → NP_001394490.1 thrombospondin-3 isoform 12
Status: REVIEWED
- Source sequence(s)
-
AC234582
- UniProtKB/TrEMBL
-
B3KQE1
-
NM_001407562.1 → NP_001394491.1 thrombospondin-3 isoform 14
Status: REVIEWED
- Source sequence(s)
-
AC234582
- UniProtKB/TrEMBL
-
B3KQE1
-
NM_007112.5 → NP_009043.1 thrombospondin-3 isoform 1 precursor
See identical proteins and their annotated locations for NP_009043.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
- Source sequence(s)
-
AC234582, BC018786, L38969
- Consensus CDS
-
CCDS1099.1
- UniProtKB/Swiss-Prot
- B1AVR8, B4DQ20, P49746, Q8WV34
- UniProtKB/TrEMBL
-
Q2HIZ0
- Related
- ENSP00000357362.3, ENST00000368378.7
- Conserved Domains (9) summary
-
- smart00210
Location:23 → 193
- TSPN; Thrombospondin N-terminal -like domains
- cd00054
Location:316 → 351
- EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
- sd00001
Location:528 → 550
- TSP3; TSP3 repeat_short [structural motif]
- sd00002
Location:551 → 586
- TSP3; TSP3 repeat_long [structural motif]
- sd00003
Location:458 → 491
- TSP3_1C; TSP3 repeat_1C [structural motif]
- pfam02412
Location:552 → 586
- TSP_3; Thrombospondin type 3 repeat
- pfam05735
Location:741 → 938
- TSP_C; Thrombospondin C-terminal region
- pfam12947
Location:378 → 407
- EGF_3; EGF domain
- cd16079
Location:227 → 269
- TSP-3cc; Coiled coil region of thrombospondin-3 (TSP-3)
RNA
-
NR_045553.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) lacks an internal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
BC018786, BC113846
- Related
-
ENST00000541990.5
-
NR_176392.1 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC234582
-
NR_176393.1 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC234582
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000001.11 Reference GRCh38.p14 Primary Assembly
- Range
-
155195588..155209178 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011509931.2 → XP_011508233.1 thrombospondin-3 isoform X7
See identical proteins and their annotated locations for XP_011508233.1
- UniProtKB/TrEMBL
-
Q2HIZ0
- Conserved Domains (9) summary
-
- cd00054
Location:278 → 313
- EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
- sd00001
Location:490 → 512
- TSP3; TSP3 repeat_short [structural motif]
- sd00002
Location:513 → 548
- TSP3; TSP3 repeat_long [structural motif]
- sd00003
Location:420 → 453
- TSP3_1C; TSP3 repeat_1C [structural motif]
- cd16079
Location:189 → 231
- TSP-3cc; Coiled coil region of thrombospondin-3 (TSP-3)
- pfam02412
Location:513 → 548
- TSP_3; Thrombospondin type 3 repeat
- pfam05735
Location:706 → 903
- TSP_C; Thrombospondin C-terminal region
- pfam12947
Location:340 → 369
- EGF_3; EGF domain
- cl22861
Location:2 → 155
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
-
XM_011509928.3 → XP_011508230.1 thrombospondin-3 isoform X4
- UniProtKB/TrEMBL
-
Q2HIZ0
- Conserved Domains (9) summary
-
- cd00054
Location:342 → 377
- EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
- sd00001
Location:554 → 576
- TSP3; TSP3 repeat_short [structural motif]
- sd00002
Location:577 → 612
- TSP3; TSP3 repeat_long [structural motif]
- sd00003
Location:484 → 517
- TSP3_1C; TSP3 repeat_1C [structural motif]
- pfam02412
Location:578 → 612
- TSP_3; Thrombospondin type 3 repeat
- pfam05735
Location:770 → 967
- TSP_C; Thrombospondin C-terminal region
- pfam12947
Location:404 → 433
- EGF_3; EGF domain
- cd16079
Location:253 → 295
- TSP-3cc; Coiled coil region of thrombospondin-3 (TSP-3)
- cl22861
Location:51 → 219
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
-
XM_047429292.1 → XP_047285248.1 thrombospondin-3 isoform X3
- UniProtKB/TrEMBL
-
Q2HIZ0
-
XM_011509927.3 → XP_011508229.1 thrombospondin-3 isoform X2
- UniProtKB/TrEMBL
-
Q2HIZ0
- Conserved Domains (9) summary
-
- cd00054
Location:364 → 399
- EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
- sd00001
Location:576 → 598
- TSP3; TSP3 repeat_short [structural motif]
- sd00002
Location:599 → 634
- TSP3; TSP3 repeat_long [structural motif]
- sd00003
Location:506 → 539
- TSP3_1C; TSP3 repeat_1C [structural motif]
- pfam02412
Location:600 → 634
- TSP_3; Thrombospondin type 3 repeat
- pfam05735
Location:792 → 989
- TSP_C; Thrombospondin C-terminal region
- pfam12947
Location:426 → 455
- EGF_3; EGF domain
- cd16079
Location:275 → 317
- TSP-3cc; Coiled coil region of thrombospondin-3 (TSP-3)
- cl22861
Location:85 → 250
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
-
XM_047429301.1 → XP_047285257.1 thrombospondin-3 isoform X6
- UniProtKB/TrEMBL
-
Q2HIZ0
-
XM_011509930.3 → XP_011508232.1 thrombospondin-3 isoform X5
- UniProtKB/TrEMBL
-
Q2HIZ0
- Conserved Domains (9) summary
-
- cd00054
Location:373 → 408
- EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
- sd00001
Location:585 → 607
- TSP3; TSP3 repeat_short [structural motif]
- sd00002
Location:608 → 643
- TSP3; TSP3 repeat_long [structural motif]
- sd00003
Location:515 → 548
- TSP3_1C; TSP3 repeat_1C [structural motif]
- pfam02412
Location:609 → 643
- TSP_3; Thrombospondin type 3 repeat
- pfam05735
Location:801 → 951
- TSP_C; Thrombospondin C-terminal region
- pfam12947
Location:435 → 464
- EGF_3; EGF domain
- cd16079
Location:284 → 326
- TSP-3cc; Coiled coil region of thrombospondin-3 (TSP-3)
- cl22861
Location:85 → 250
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
-
XM_011509926.3 → XP_011508228.1 thrombospondin-3 isoform X1
- UniProtKB/TrEMBL
-
Q2HIZ0
- Conserved Domains (9) summary
-
- cd00054
Location:373 → 408
- EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
- sd00001
Location:585 → 607
- TSP3; TSP3 repeat_short [structural motif]
- sd00002
Location:608 → 643
- TSP3; TSP3 repeat_long [structural motif]
- sd00003
Location:515 → 548
- TSP3_1C; TSP3 repeat_1C [structural motif]
- pfam02412
Location:609 → 643
- TSP_3; Thrombospondin type 3 repeat
- pfam05735
Location:801 → 998
- TSP_C; Thrombospondin C-terminal region
- pfam12947
Location:435 → 464
- EGF_3; EGF domain
- cd16079
Location:284 → 326
- TSP-3cc; Coiled coil region of thrombospondin-3 (TSP-3)
- cl22861
Location:85 → 250
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
-
XM_047429305.1 → XP_047285261.1 thrombospondin-3 isoform X7
- UniProtKB/TrEMBL
-
Q2HIZ0
-
XM_011509932.3 → XP_011508234.1 thrombospondin-3 isoform X7
See identical proteins and their annotated locations for XP_011508234.1
- UniProtKB/TrEMBL
-
Q2HIZ0
- Conserved Domains (9) summary
-
- cd00054
Location:278 → 313
- EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
- sd00001
Location:490 → 512
- TSP3; TSP3 repeat_short [structural motif]
- sd00002
Location:513 → 548
- TSP3; TSP3 repeat_long [structural motif]
- sd00003
Location:420 → 453
- TSP3_1C; TSP3 repeat_1C [structural motif]
- cd16079
Location:189 → 231
- TSP-3cc; Coiled coil region of thrombospondin-3 (TSP-3)
- pfam02412
Location:513 → 548
- TSP_3; Thrombospondin type 3 repeat
- pfam05735
Location:706 → 903
- TSP_C; Thrombospondin C-terminal region
- pfam12947
Location:340 → 369
- EGF_3; EGF domain
- cl22861
Location:2 → 155
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
-
XM_011509936.2 → XP_011508238.1 thrombospondin-3 isoform X9
- UniProtKB/TrEMBL
-
B3KQE1
- Conserved Domains (8) summary
-
- smart00179
Location:115 → 149
- EGF_CA; Calcium-binding EGF-like domain
- cd00054
Location:61 → 96
- EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
- sd00001
Location:273 → 295
- TSP3; TSP3 repeat_short [structural motif]
- sd00002
Location:296 → 331
- TSP3; TSP3 repeat_long [structural motif]
- sd00003
Location:203 → 236
- TSP3_1C; TSP3 repeat_1C [structural motif]
- pfam02412
Location:296 → 331
- TSP_3; Thrombospondin type 3 repeat
- NF000535
Location:194 → 424
- MSCRAMM_SdrC; MSCRAMM family adhesin SdrC
- cl13107
Location:1 → 14
- TSPcc; Coiled coil region of thrombospondin
-
XM_047429308.1 → XP_047285264.1 thrombospondin-3 isoform X8
-
XM_047429322.1 → XP_047285278.1 thrombospondin-3 isoform X10
-
XM_047429323.1 → XP_047285279.1 thrombospondin-3 isoform X11
-
XM_047429324.1 → XP_047285280.1 thrombospondin-3 isoform X11
-
XM_047429326.1 → XP_047285282.1 thrombospondin-3 isoform X12
RNA
-
XR_002957482.2 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060925.1 Alternate T2T-CHM13v2.0
- Range
-
154334151..154347741 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054338541.1 → XP_054194516.1 thrombospondin-3 isoform X7
- UniProtKB/TrEMBL
-
Q2HIZ0
-
XM_054338538.1 → XP_054194513.1 thrombospondin-3 isoform X2
- UniProtKB/TrEMBL
-
Q2HIZ0
-
XM_054338540.1 → XP_054194515.1 thrombospondin-3 isoform X6
- UniProtKB/TrEMBL
-
Q2HIZ0
-
XM_054338539.1 → XP_054194514.1 thrombospondin-3 isoform X5
- UniProtKB/TrEMBL
-
Q2HIZ0
-
XM_054338537.1 → XP_054194512.1 thrombospondin-3 isoform X1
- UniProtKB/TrEMBL
-
Q2HIZ0
-
XM_054338542.1 → XP_054194517.1 thrombospondin-3 isoform X7
- UniProtKB/TrEMBL
-
Q2HIZ0
-
XM_054338544.1 → XP_054194519.1 thrombospondin-3 isoform X13
- UniProtKB/TrEMBL
-
Q2HIZ0
-
XM_054338543.1 → XP_054194518.1 thrombospondin-3 isoform X7
- UniProtKB/TrEMBL
-
Q2HIZ0
-
XM_054338546.1 → XP_054194521.1 thrombospondin-3 isoform X9
- UniProtKB/TrEMBL
-
B3KQE1
-
XM_054338545.1 → XP_054194520.1 thrombospondin-3 isoform X8
-
XM_054338547.1 → XP_054194522.1 thrombospondin-3 isoform X10
-
XM_054338548.1 → XP_054194523.1 thrombospondin-3 isoform X11
-
XM_054338549.1 → XP_054194524.1 thrombospondin-3 isoform X11
-
XM_054338550.1 → XP_054194525.1 thrombospondin-3 isoform X12
RNA
-
XR_008486159.1 RNA Sequence