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    5730522E02Rik RIKEN cDNA 5730522E02 gene [ Mus musculus (house mouse) ]

    Gene ID: 70626, updated on 17-Aug-2024

    Summary

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    Official Symbol
    5730522E02Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 5730522E02 geneprovided by MGI
    Primary source
    MGI:MGI:1917876
    See related
    AllianceGenome:MGI:1917876
    Gene type
    ncRNA
    RefSeq status
    PREDICTED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Biased expression in CNS E18 (RPKM 1.4), CNS E14 (RPKM 1.0) and 6 other tissues See more
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    Genomic context

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    See 5730522E02Rik in Genome Data Viewer
    Location:
    11 A3.2- A3.3; 11 15.4 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (25566846..26160576, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (25616846..26210576, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4933427E13 gene Neighboring gene predicted gene 12069 Neighboring gene STARR-seq mESC enhancer starr_28944 Neighboring gene STARR-seq mESC enhancer starr_28945 Neighboring gene STARR-seq mESC enhancer starr_28946 Neighboring gene STARR-seq mESC enhancer starr_28947 Neighboring gene STARR-seq mESC enhancer starr_28948 Neighboring gene predicted gene, 23514 Neighboring gene STARR-seq mESC enhancer starr_28949 Neighboring gene STARR-seq mESC enhancer starr_28950 Neighboring gene predicted gene, 51856 Neighboring gene STARR-seq mESC enhancer starr_28953 Neighboring gene STARR-seq mESC enhancer starr_28954 Neighboring gene STARR-seq mESC enhancer starr_28955 Neighboring gene STARR-seq mESC enhancer starr_28956 Neighboring gene STARR-seq mESC enhancer starr_28958 Neighboring gene STARR-seq mESC enhancer starr_28962 Neighboring gene STARR-seq mESC enhancer starr_28963 Neighboring gene microRNA 6372 Neighboring gene predicted gene, 31023 Neighboring gene predicted gene, 22868

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Conserved expression of ultra-conserved noncoding RNA in mammalian nervous system. Zhou J, et al. Biochim Biophys Acta Gene Regul Mech, 2017 Dec. PMID 29055695
    2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_027973.1 RNA Sequence

      Status: PREDICTED

      Source sequence(s)
      AL929545, BY713762, BY724063

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      25566846..26160576 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_027486.1: Suppressed sequence

      Description
      NM_027486.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

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