U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    Naa40 N(alpha)-acetyltransferase 40, NatD catalytic subunit [ Mus musculus (house mouse) ]

    Gene ID: 70999, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Naa40provided by MGI
    Official Full Name
    N(alpha)-acetyltransferase 40, NatD catalytic subunitprovided by MGI
    Primary source
    MGI:MGI:1918249
    See related
    Ensembl:ENSMUSG00000024764 AllianceGenome:MGI:1918249
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    NatD; Nat11; 4931433E08Rik
    Summary
    Predicted to enable histone H2A acetyltransferase activity; histone H4 acetyltransferase activity; and peptide-serine-alpha-N-acetyltransferase activity. Acts upstream of or within lipid metabolic process. Predicted to be located in centriolar satellite; cytosol; and nucleoplasm. Predicted to be active in nucleus. Orthologous to human NAA40 (N-alpha-acetyltransferase 40, NatD catalytic subunit). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in testis adult (RPKM 26.2), whole brain E14.5 (RPKM 19.6) and 28 other tissues See more
    Orthologs
    human all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Naa40 in Genome Data Viewer
    Location:
    19 A; 19 5.29 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (7203033..7218587, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (7225668..7241222, complement)

    Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene OTU domain, ubiquitin aldehyde binding 1 Neighboring gene STARR-positive B cell enhancer ABC_E8735 Neighboring gene cytochrome c oxidase subunit 8A Neighboring gene STARR-positive B cell enhancer ABC_E11671 Neighboring gene STARR-positive B cell enhancer ABC_E8736 Neighboring gene predicted gene, 22113 Neighboring gene STARR-seq mESC enhancer starr_45459 Neighboring gene REST corepressor 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Histone acetyltransferase NAA40 modulates acetyl-CoA levels and lipid synthesis. Charidemou E, et al. BMC Biol, 2022 Jan 20. PMID 35057804, Free PMC Article
    2. Liver Patt1 deficiency protects male mice from age-associated but not high-fat diet-induced hepatic steatosis. Liu Y, et al. J Lipid Res, 2012 Mar. PMID 22231784, Free PMC Article
    3. Interaction of Sox2 with RNA binding proteins in mouse embryonic stem cells. Samudyata, et al. Exp Cell Res, 2019 Aug 1. PMID 31077711, Free PMC Article
    4. The central role of EED in the orchestration of polycomb group complexes. Cao Q, et al. Nat Commun, 2014. PMID 24457600, Free PMC Article
    5. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808

    See all (22) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Histone acetyltransferase NAA40 modulates acetyl-CoA levels and lipid synthesis.
      Title: Histone acetyltransferase NAA40 modulates acetyl-CoA levels and lipid synthesis.
    Submit: New GeneRIF Correction

    Variation

    Go to the top of the page Help

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 
    • Gene trapped (1) 
    • Targeted (1)  1 citation

    Pathways from PubChem

    Go to the top of the page

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables histone H2A acetyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables histone H2A acetyltransferase activity ISO
    Inferred from Sequence Orthology
    more info
    		  
    enables histone H2A acetyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables histone H4 acetyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables histone H4 acetyltransferase activity ISO
    Inferred from Sequence Orthology
    more info
    		  
    enables histone H4 acetyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables peptide-serine-alpha-N-acetyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables peptide-serine-alpha-N-acetyltransferase activity ISO
    Inferred from Sequence Orthology
    more info
    		  
    enables peptide-serine-alpha-N-acetyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within lipid metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in centriolar satellite IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in centriolar satellite ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    N-alpha-acetyltransferase 40
    Names
    N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog
    N-acetyltransferase 11
    N-alpha-acetyltransferase D
    Nalpha acetyltransferase 40
    natD catalytic subunit
    protein acetyltransferase 1
    NP_081919.1
    XP_006527399.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027643.1 → NP_081919.1  N-alpha-acetyltransferase 40

      See identical proteins and their annotated locations for NP_081919.1

      Status: VALIDATED

      Source sequence(s)
      AK033510, AK033896, BB112808, BY107005
      Consensus CDS
      CCDS50377.1
      UniProtKB/Swiss-Prot
      Q3V3R7, Q6PE89, Q8VE10, Q9D4I5
      Related
      ENSMUSP00000025675.10, ENSMUST00000025675.11
      Conserved Domains (1) summary
      pfam00583
      Location:80 → 188
      Acetyltransf_1; Acetyltransferase (GNAT) family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000085.7 Reference GRCm39 C57BL/6J

      Range
      7203033..7218587 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006527336.5 → XP_006527399.1  N-alpha-acetyltransferase 40 isoform X1

      Conserved Domains (1) summary
      cl17182
      Location:94 → 135
      NAT_SF; N-Acyltransferase superfamily: Various enyzmes that characteristicly catalyze the transfer of an acyl group to a substrate
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VE10.1 GenPept UniProtKB/Swiss-Prot:Q8VE10

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools