U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    PHATRDRAFT_19761 hypothetical protein [ Phaeodactylum tricornutum CCAP 1055/1 ]

    Gene ID: 7199943, updated on 21-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    PHATRDRAFT_19761
    Gene description
    hypothetical protein
    Locus tag
    PHATRDRAFT_19761
    Gene type
    protein coding
    RNA name
    predicted protein
    RefSeq status
    PROVISIONAL
    Organism
    Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
    Lineage
    Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See PHATRDRAFT_19761 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    2
    Sequence:
    Chromosome: 6; NC_011674.1 (748175..750501)

    Chromosome 6 - NC_011674.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_011674.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables glycine-tRNA ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mitochondrial glycyl-tRNA aminoacylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Names
    hypothetical protein

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_011674.1 Reference assembly

      Range
      748175..750501
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002179245.1 → XP_002179281.1  predicted protein [Phaeodactylum tricornutum CCAP 1055/1]

      See identical proteins and their annotated locations for XP_002179281.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8J9SY75, B7FX58
      Conserved Domains (3) summary
      PLN02734
      Location:5 → 677
      PLN02734; glycyl-tRNA synthetase
      cd00774
      Location:74 → 417
      GlyRS-like_core; Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' ...
      cd00858
      Location:534 → 646
      GlyRS_anticodon; GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is ...
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials