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    HemE_1 uroporphyrinogen decarboxylase [ Phaeodactylum tricornutum CCAP 1055/1 ]

    Gene ID: 7201630, updated on 21-Dec-2023

    Summary

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    Gene symbol
    HemE_1
    Gene description
    uroporphyrinogen decarboxylase
    Locus tag
    PHATRDRAFT_20757
    Gene type
    protein coding
    RNA name
    uroporphyrinogen decarboxylase
    RefSeq status
    PROVISIONAL
    Organism
    Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
    Lineage
    Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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    Genomic context

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    See HemE_1 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    1
    Sequence:
    Chromosome: 10; NC_011678.1 (119247..120685, complement)

    Chromosome 10 - NC_011678.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_011678.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables uroporphyrinogen decarboxylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in porphyrin-containing compound biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    uroporphyrinogen decarboxylase
    XP_002180946.1
    • sevenths step in the heme synthesis; enzyme is of cyanobacterial origin, extension at the N terminus (27 aa) contains ER signal peptide (SignalP score = 0.998); putatively chloroplast targeted

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_011678.1 Reference assembly

      Range
      119247..120685 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002180910.1 → XP_002180946.1  uroporphyrinogen decarboxylase [Phaeodactylum tricornutum CCAP 1055/1]

      See identical proteins and their annotated locations for XP_002180946.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8J9SGW6, B7G0Z0
      Conserved Domains (1) summary
      PLN02433
      Location:86 → 430
      PLN02433; uroporphyrinogen decarboxylase
    Nucleotide Protein
    Heading Accession and Version

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