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    ci-zf(matrin)-4 zinc finger protein Ci-ZF(MATRIN)-4 [ Ciona intestinalis (vase tunicate) ]

    Gene ID: 723802, updated on 21-Dec-2023

    Summary

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    Gene symbol
    ci-zf(matrin)-4
    Gene description
    zinc finger protein Ci-ZF(MATRIN)-4
    See related
    Ensembl:ENSCING00000021229
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Ciona intestinalis
    Lineage
    Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
    Also known as
    U1C; U1-C
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    Genomic context

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    See ci-zf(matrin)-4 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    104 current KH (GCF_000224145.3) Unplaced Scaffold NW_004190352.2 (154134..154856)

    NW_004190352.2Genomic Context describing neighboring genes Neighboring gene paired box protein Pax-3-B-like Neighboring gene serine/Arginine-related protein 53-like Neighboring gene protein dj-1beta Neighboring gene oxysterol-binding protein-related protein 11-like Neighboring gene 3'(2'),5'-bisphosphate nucleotidase 1-like Neighboring gene thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004190352 Unplaced Scaffold Reference KH Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins. Dehal P, et al. Science, 2002 Dec 13. PMID 12481130
    2. Systematic analysis of embryonic expression profiles of zinc finger genes in Ciona intestinalis. Miwata K, et al. Dev Biol, 2006 Apr 15. PMID 16519883
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables pre-mRNA 5'-splice site binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA 5'-splice site recognition IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in spliceosomal snRNP assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U1 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U1 small nuclear ribonucleoprotein C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001047989.1 → NP_001041454.1  U1 small nuclear ribonucleoprotein C

      See identical proteins and their annotated locations for NP_001041454.1

      Status: PROVISIONAL

      Source sequence(s)
      BR000105
      UniProtKB/Swiss-Prot
      Q1RLC9
      Related
      ENSCINP00000035879, ENSCINT00000035913
      Conserved Domains (1) summary
      pfam06220
      Location:1 → 38
      zf-U1; U1 zinc finger

    RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference KH Primary Assembly

    Genomic

    1. NW_004190352.2 Reference KH Primary Assembly

      Range
      154134..154856
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q1RLC9.1 GenPept UniProtKB/Swiss-Prot:Q1RLC9

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials