U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    BC106175 cDNA sequence BC106175 [ Mus musculus (house mouse) ]

    Gene ID: 724112, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    BC106175provided by MGI
    Official Full Name
    cDNA sequence BC106175provided by MGI
    Primary source
    MGI:MGI:3628444
    See related
    Ensembl:ENSMUSG00000121738 AllianceGenome:MGI:3628444
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Is expressed in adipose tissue; heart; testis; and trunk. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward testis adult (RPKM 402.7) See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See BC106175 in Genome Data Viewer
    Location:
    12 A1.1; 12 3.88 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (8528874..8532207, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (8478874..8482213, complement)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 33134 Neighboring gene STARR-seq mESC enhancer starr_31500 Neighboring gene STARR-seq mESC enhancer starr_31501 Neighboring gene STARR-seq mESC enhancer starr_31502 Neighboring gene STARR-seq mESC enhancer starr_31503 Neighboring gene predicted gene, 51967 Neighboring gene STARR-seq mESC enhancer starr_31505 Neighboring gene RIKEN cDNA 5033421B08 gene Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:8528304-8528487 Neighboring gene ras homolog family member B Neighboring gene predicted gene, 57593

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Identification of cathepsin K as a novel marker of adiposity in white adipose tissue. Chiellini C, et al. J Cell Physiol, 2003 May. PMID 12652657
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Other Names

    • proline-rich protein 30 pseudogene

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_183073.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC166361

    2. NR_183074.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC166361

    3. NR_183075.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC166361

    4. NR_183076.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC166361
      Related
      ENSMUST00000218578.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      8528874..8532207 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.