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    2610307P16Rik RIKEN cDNA 2610307P16 gene [ Mus musculus (house mouse) ]

    Gene ID: 72518, updated on 22-Oct-2024

    Summary

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    Official Symbol
    2610307P16Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 2610307P16 geneprovided by MGI
    Primary source
    MGI:MGI:1919768
    See related
    Ensembl:ENSMUSG00000085936 AllianceGenome:MGI:1919768
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Biased expression in thymus adult (RPKM 4.2), CNS E11.5 (RPKM 2.9) and 13 other tissues See more
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    Genomic context

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    See 2610307P16Rik in Genome Data Viewer
    Location:
    13 A3.1; 13 12.76 cM
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (28644017..29069405, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (28460034..28885422, complement)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene predicted gene 3821 Neighboring gene STARR-seq mESC enhancer starr_34031 Neighboring gene predicted gene, 40841 Neighboring gene STARR-positive B cell enhancer ABC_E10786 Neighboring gene CapStarr-seq enhancer MGSCv37_chr13:28604501-28604741 Neighboring gene STARR-positive B cell enhancer ABC_E8520 Neighboring gene peptidylprolyl isomerase A pseudogene 13_297.1 Neighboring gene STARR-seq mESC enhancer starr_34032 Neighboring gene VISTA enhancer mm265 Neighboring gene STARR-seq mESC enhancer starr_34035 Neighboring gene microRNA 6368 Neighboring gene CapStarr-seq enhancer MGSCv37_chr13:28849781-28849890 Neighboring gene STARR-seq mESC enhancer starr_34037 Neighboring gene STARR-seq mESC enhancer starr_34040 Neighboring gene CapStarr-seq enhancer MGSCv37_chr13:28925292-28925505 Neighboring gene predicted gene, 53780 Neighboring gene predicted gene, 34639 Neighboring gene predicted gene, 34697

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation. Alvarez-Dominguez JR, et al. Blood, 2014 Jan 23. PMID 24200680, Free PMC Article
    2. Widespread and dynamic translational control of red blood cell development. Alvarez-Dominguez JR, et al. Blood, 2017 Feb 2. PMID 27899360, Free PMC Article
    3. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article
    4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_045053.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) is the longer transcript.
      Source sequence(s)
      AL590626, AL606488, AL606528
      Related
      ENSMUST00000134624.4

    2. NR_045054.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in a few of internal exons, and represents a shorter transcript, compared to variant 1.
      Source sequence(s)
      AL590626, AL606488, AL606528
      Related
      ENSMUST00000243041.1

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      28644017..29069405 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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