ppp1r13l protein phosphatase 1 regulatory subunit 13 like [Xenopus tropicalis (tropical clawed frog)] - Gene

Summary

Official Symbol: ppp1r13lprovided by Xenbase
Official Full Name: protein phosphatase 1 regulatory subunit 13 likeprovided by Xenbase
Primary source: Xenbase:XB-GENE-5848597
See related: Ensembl:ENSXETG00000018235 AllianceGenome:Xenbase:XB-GENE-5848597
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus tropicalis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Summary: Predicted to enable p53 binding activity. Predicted to act upstream of or within apoptotic process and regulation of apoptotic process. Predicted to be located in nucleus. Orthologous to human PPP1R13L (protein phosphatase 1 regulatory subunit 13 like). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 8

Exon count:: 13

Annotation release	Status	Assembly	Chr	Location
104	current	UCB_Xtro_10.0 (GCF_000004195.4)	8	NC_030684.2 (70723400..70756105)
103	previous assembly	Xenopus_tropicalis_v9.1 (GCF_000004195.3)	8	NC_030684.1 (49609056..49642478)

Chromosome 8 - NC_030684.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables p53 binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within apoptotic process	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within regulation of apoptotic process	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: relA-associated inhibitor

Names: protein phosphatase 1, regulatory (inhibitor) subunit 13 like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001045659.1 → NP_001039124.1 relA-associated inhibitor

See identical proteins and their annotated locations for NP_001039124.1

Status: PROVISIONAL

Source sequence(s)

CR942470

UniProtKB/TrEMBL

A0A803JJQ6, Q28C37

Related

ENSXETP00000108165.1, ENSXETT00000107221.1

Conserved Domains (4) summary

cd11952
Location:732 → 787

SH3_iASPP; Src Homology 3 (SH3) domain of Inhibitor of ASPP protein (iASPP)

cd00204
Location:605 → 719

ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...

pfam12796
Location:602 → 693

Ank_2; Ankyrin repeats (3 copies)

sd00045
Location:602 → 628

ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

Range

70723400..70756105

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_031890509.1 → XP_031746369.1 relA-associated inhibitor isoform X2

UniProtKB/TrEMBL

A0A8J1ILK9, F6V7Z3

Conserved Domains (3) summary

cd11952
Location:767 → 822

SH3_iASPP; Src Homology 3 (SH3) domain of Inhibitor of ASPP protein (iASPP)

sd00045
Location:637 → 663

ANK; ANK repeat [structural motif]

pfam12796
Location:637 → 723

Ank_2; Ankyrin repeats (3 copies)
XM_031890507.1 → XP_031746367.1 relA-associated inhibitor isoform X1

UniProtKB/TrEMBL

A0A8J1ILK6, F6V7Z3

Related

ENSXETP00000077773.2, ENSXETT00000080754.2

Conserved Domains (3) summary

cd11952
Location:774 → 829

SH3_iASPP; Src Homology 3 (SH3) domain of Inhibitor of ASPP protein (iASPP)

sd00045
Location:644 → 670

ANK; ANK repeat [structural motif]

pfam12796
Location:644 → 730

Ank_2; Ankyrin repeats (3 copies)