CDY1 chromodomain protein, Y-linked, 1 [Pan troglodytes (chimpanzee)] - Gene

Summary

Gene symbol: CDY1
Gene description: chromodomain protein, Y-linked, 1
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Pan troglodytes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as: CDY
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Genomic context

Location:: chromosome: Y

Exon count:: 1

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2)	Y	NC_072422.2 (20320841..20322820)
RS_2023_04	previous assembly	NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1)	Y	NC_072422.1 (16123187..16125166, complement)

Chromosome Y - NC_072422.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

sY639 (e-PCR)
- UniSTS:243208

G38355 (e-PCR)
- UniSTS:43279

sY1262 (e-PCR)
- UniSTS:514654

G65845 (e-PCR)
- UniSTS:230511

sY1260 (e-PCR)
- UniSTS:478845

G65871 (e-PCR)
- UniSTS:230537

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables transcription corepressor activity	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: chromodomain protein, Y-linked, 1

Names: Y chromosome chromodomain protein 1, telomeric; chromodomain Y protein; testis-specific chromodomain protein Y 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001246495.1 → NP_001233424.1 chromodomain protein, Y-linked, 1

See identical proteins and their annotated locations for NP_001233424.1

Status: PROVISIONAL

Source sequence(s)

AK305463

UniProtKB/TrEMBL

A0A2J8PX06, A0A6D2XH71, G2HFE9, H2RFV0

Conserved Domains (2) summary

cd06558
Location:287 → 484

crotonase-like; Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. ...

smart00298
Location:5 → 59

CHROMO; Chromatin organization modifier domain