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    THAPSDRAFT_269616 translation factor elongation factor ef-tu [ Thalassiosira pseudonana CCMP1335 ]

    Gene ID: 7447533, updated on 21-Dec-2023

    Summary

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    Gene symbol
    THAPSDRAFT_269616
    Gene description
    translation factor elongation factor ef-tu
    Locus tag
    THAPSDRAFT_269616
    Gene type
    protein coding
    RNA name
    translation factor elongation factor ef-tu
    RefSeq status
    PROVISIONAL
    Organism
    Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
    Lineage
    Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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    Genomic context

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    See THAPSDRAFT_269616 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    4
    Sequence:
    Chromosome: 12; NC_012075.1 (445949..447966, complement)

    Chromosome 12 - NC_012075.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene DNA directed RNA polymerase i, second largest subunit Neighboring gene hypothetical protein Neighboring gene histone H3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_012075.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
    2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables translation elongation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mitochondrial translational elongation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    translation factor elongation factor ef-tu
    XP_002293181.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_012075.1 Reference assembly

      Range
      445949..447966 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002293145.1 → XP_002293181.1  translation factor elongation factor ef-tu [Thalassiosira pseudonana CCMP1335]

      See identical proteins and their annotated locations for XP_002293181.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      B8CA96
      Conserved Domains (4) summary
      PLN03127
      Location:2 → 430
      PLN03127; Elongation factor Tu; Provisional
      cd01884
      Location:45 → 239
      EF_Tu; Elongation Factor Tu (EF-Tu) GTP-binding proteins
      cd03697
      Location:247 → 333
      EFTU_II; Domain II of elongation factor Tu
      cd03707
      Location:338 → 425
      EFTU_III; Domain III of Elongation Factor (EF) Tu
    Nucleotide Protein
    Heading Accession and Version

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