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    LOC7455006 probable aquaporin NIP5-1 [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 7455006, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC7455006
    Gene description
    probable aquaporin NIP5-1
    Locus tag
    POPTR_011G146900v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    See LOC7455006 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 11 NC_037295.2 (17504728..17509764, complement)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 11 NC_037295.1 (16641244..16646462, complement)

    Chromosome 11 - NC_037295.2Genomic Context describing neighboring genes Neighboring gene kinesin-like protein KIN-14E Neighboring gene N-acylphosphatidylethanolamine synthase Neighboring gene protein FATTY ACID EXPORT 4, chloroplastic Neighboring gene probable receptor-like protein kinase At4g10390

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable aquaporin NIP5-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037295.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      17504728..17509764 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002317606.3 → XP_002317642.1  probable aquaporin NIP5-1

      UniProtKB/TrEMBL
      B9I0M4
      Conserved Domains (1) summary
      PLN00026
      Location:3 → 300
      PLN00026; aquaporin NIP; Provisional
    Nucleotide Protein
    Heading Accession and Version

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