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    LOC7474964 acidic endochitinase WIN6 [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 7474964, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC7474964
    Gene description
    acidic endochitinase WIN6
    Locus tag
    POPTR_009G141800v4
    Gene type
    protein coding
    RefSeq status
    INFERRED
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
    Also known as
    gwin6.2c
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    Genomic context

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    See LOC7474964 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 9 NC_037293.2 (11319766..11321289, complement)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 9 NC_037293.1 (11283145..11284687, complement)

    Chromosome 9 - NC_037293.2Genomic Context describing neighboring genes Neighboring gene NAC domain-containing protein 6 Neighboring gene probable inactive chitinase-like protein LaCIC Neighboring gene acidic endochitinase WIN6.2B Neighboring gene basic endochitinase-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell wall macromolecule catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in chitin catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in defense response to fungus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    acidic endochitinase WIN6; acidic endochitinase WIN6.2C
    Names
    Acidic endochitinase WIN6.2C
    XP_002312922.3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423947.1 → NP_001410876.1  acidic endochitinase WIN6.2C precursor

      Status: INFERRED

      Source sequence(s)
      AARH04000041
      UniProtKB/TrEMBL
      B9HQZ1

    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037293.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      11319766..11321289 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002312886.4 → XP_002312922.3  acidic endochitinase WIN6

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P29032.1 GenPept UniProtKB/Swiss-Prot:P29032

    Gene LinkOut

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    Molecular Biology Databases
    Research Materials