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    Spin2-ps1 spindlin family, member 2, pseudogene 1 [ Mus musculus (house mouse) ]

    Gene ID: 74851, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Spin2-ps1provided by MGI
    Official Full Name
    spindlin family, member 2, pseudogene 1provided by MGI
    Primary source
    MGI:MGI:3650966
    See related
    Ensembl:ENSMUSG00000080300 AllianceGenome:MGI:3650966
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm14354
    Summary
    Predicted to enable methylated histone binding activity. Predicted to be located in cytosol and nucleoplasm. Orthologous to human SPIN2A (spindlin family member 2A) and SPIN2B (spindlin family member 2B). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Spin2-ps1 in Genome Data Viewer
    Location:
    X A1.1; X 1.69 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (3740904..3741681, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (3835879..3836656, complement)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene BTB domain containing 35, family member 10 Neighboring gene predicted gene 14357 Neighboring gene STARR-seq mESC enhancer starr_46616 Neighboring gene STARR-seq mESC enhancer starr_46617 Neighboring gene STARR-seq mESC enhancer starr_46618 Neighboring gene STARR-seq mESC enhancer starr_46619 Neighboring gene STARR-seq mESC enhancer starr_46620 Neighboring gene BTB domain containing 35, family member 16 Neighboring gene predicted gene, 46693 Neighboring gene predicted gene, 17854

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables methylated histone binding ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    spindlin 2 family member

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_029106.2 → NP_083382.2  spindlin 2 family member

      Status: VALIDATED

      Source sequence(s)
      CT027595
      UniProtKB/TrEMBL
      Q149L1
      Related
      ENSMUSP00000160072.1, ENSMUST00000116643.4
      Conserved Domains (1) summary
      pfam02513
      Location:30 → 77
      Spin-Ssty; Spin/Ssty Family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      3740904..3741681 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases
    Research Materials