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    LOC7490468 uncharacterized LOC7490468 [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 7490468, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC7490468
    Gene description
    uncharacterized LOC7490468
    Locus tag
    POPTR_018G133700v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    See LOC7490468 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 18 NC_037302.2 (14279733..14281937)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 18 NC_037302.1 (15393701..15395924)

    Chromosome 18 - NC_037302.2Genomic Context describing neighboring genes Neighboring gene glutaredoxin-C4 Neighboring gene uncharacterized LOC7484040 Neighboring gene probable serine/threonine-protein kinase PIX13 Neighboring gene beta-amyrin 28-monooxygenase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables SNAP receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SNARE complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC7490468

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037302.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      14279733..14281937
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002324629.4 → XP_002324665.1  uncharacterized protein LOC7490468

      See identical proteins and their annotated locations for XP_002324665.1

      UniProtKB/TrEMBL
      B9IN18
      Conserved Domains (1) summary
      pfam09753
      Location:6 → 239
      Use1; Membrane fusion protein Use1
    Nucleotide Protein
    Heading Accession and Version

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