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    4930533K18Rik RIKEN cDNA 4930533K18 gene [ Mus musculus (house mouse) ]

    Gene ID: 75189, updated on 9-Dec-2024

    Summary

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    Official Symbol
    4930533K18Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 4930533K18 geneprovided by MGI
    Primary source
    MGI:MGI:1922439
    See related
    Ensembl:ENSMUSG00000047692 AllianceGenome:MGI:1922439
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4933433H14Rik
    Summary
    Is expressed in brain subventricular zone; central nervous system; cerebellum; retina inner nuclear layer; and retina outer nuclear layer. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward testis adult (RPKM 4.1) See more
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    Genomic context

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    See 4930533K18Rik in Genome Data Viewer
    Location:
    10 B5.3; 10 36.74 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (70704471..70770070)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (70868641..70934240)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_27096 Neighboring gene predicted gene, 33979 Neighboring gene STARR-seq mESC enhancer starr_27101 Neighboring gene STARR-seq mESC enhancer starr_27102 Neighboring gene STARR-seq mESC enhancer starr_27103 Neighboring gene predicted gene, 40689 Neighboring gene STARR-seq mESC enhancer starr_27108 Neighboring gene predicted gene, 24486 Neighboring gene BicC family RNA binding protein 1 Neighboring gene U6 snRNA-associated Sm-like protein LSm7 pseudogene Neighboring gene thioredoxin-like 4B pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. USP7 represses lineage differentiation genes in mouse embryonic stem cells by both catalytic and noncatalytic activities. Liu C, et al. Sci Adv, 2023 May 19. PMID 37196079, Free PMC Article
    2. Genomic analysis of mouse retinal development. Blackshaw S, et al. PLoS Biol, 2004 Sep. PMID 15226823, Free PMC Article
    3. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
    4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_166096.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC087891

    2. NR_166097.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC087891
      Related
      ENSMUST00000218757.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      70704471..70770070
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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