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    9130401M01Rik RIKEN cDNA 9130401M01 gene [ Mus musculus (house mouse) ]

    Gene ID: 75758, updated on 27-Nov-2024

    Summary

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    Official Symbol
    9130401M01Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 9130401M01 geneprovided by MGI
    Primary source
    MGI:MGI:1923008
    See related
    Ensembl:ENSMUSG00000101892 AllianceGenome:MGI:1923008
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Is expressed in cerebral cortex ventricular layer; pituitary gland; and submandibular gland primordium. Orthologous to several human genes including C8orf76 (chromosome 8 open reading frame 76). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in ovary adult (RPKM 18.7), adrenal adult (RPKM 17.9) and 28 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See 9130401M01Rik in Genome Data Viewer
    Location:
    15 D1; 15 24.23 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (57885666..57897690, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (58022270..58034294, complement)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E5478 Neighboring gene nuclear encoded tRNA methionine 16 (anticodon CAT) Neighboring gene predicted gene, 57624 Neighboring gene family with sequence similarity 83, member A Neighboring gene STARR-positive B cell enhancer ABC_E5479 Neighboring gene STARR-positive B cell enhancer ABC_E8589 Neighboring gene predicted gene, 53893 Neighboring gene predicted gene, 22299

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Partial transcriptome of the developing pituitary gland. Douglas KR, et al. Genomics, 2000 Dec 15. PMID 11161784
    2. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
    3. Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Bedogni F, et al. Front Mol Neurosci, 2021. PMID 34321999, Free PMC Article
    4. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
    5. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Potential readthrough

    Included gene: Zhx1

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C8orf76 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_029418.4 → NP_083694.1  uncharacterized protein C8orf76 homolog

      See identical proteins and their annotated locations for NP_083694.1

      Status: PROVISIONAL

      Source sequence(s)
      BC050895
      Consensus CDS
      CCDS37078.1
      UniProtKB/Swiss-Prot
      Q9D2X8
      Related
      ENSMUSP00000098220.4, ENSMUST00000100655.5
      Conserved Domains (2) summary
      sd00006
      Location:130 → 159
      TPR; TPR repeat [structural motif]
      pfam13432
      Location:60 → 114
      TPR_16; Tetratricopeptide repeat

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      57885666..57897690 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9D2X8.1 GenPept UniProtKB/Swiss-Prot:Q9D2X8

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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