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    eph3 ephrin receptor [ Ciona intestinalis (vase tunicate) ]

    Gene ID: 778589, updated on 11-Apr-2024

    Summary

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    Gene symbol
    eph3
    Gene description
    ephrin receptor
    See related
    Ensembl:ENSCING00000007163
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Ciona intestinalis
    Lineage
    Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
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    Genomic context

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    See eph3 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    104 current KH (GCF_000224145.3) 7 NC_020172.2 (3849267..3862403)

    Chromosome 7 - NC_020172.2Genomic Context describing neighboring genes Neighboring gene sphingosine 1-phosphate receptor 3 Neighboring gene F-box/WD repeat-containing protein 10-like Neighboring gene uncharacterized LOC100184222 Neighboring gene microRNA mir-4100 Neighboring gene renin receptor

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_020172.2 Chromosome 7 Reference KH Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene expression profiles of transcription factors and signaling molecules in the ascidian embryo: towards a comprehensive understanding of gene networks. Imai KS, et al. Development, 2004 Aug. PMID 15269171
    2. Genomewide surveys of developmentally relevant genes in Ciona intestinalis. Satou Y, et al. Dev Genes Evol, 2003 Jun. PMID 12736827
    3. A cDNA resource from the basal chordate Ciona intestinalis. Satou Y, et al. Genesis, 2002 Aug. PMID 12203911
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transmembrane-ephrin receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell surface receptor protein tyrosine kinase signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in neuron projection IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ephrin receptor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001078223.1 → NP_001071691.1  ephrin receptor precursor

      See identical proteins and their annotated locations for NP_001071691.1

      Status: PROVISIONAL

      Source sequence(s)
      AB210397
      UniProtKB/TrEMBL
      A0A1W2VRN8, F6VYJ2, F6ZB89, Q4H3M5
      Related
      ENSCINP00000014701, ENSCINT00000014701
      Conserved Domains (7) summary
      smart00454
      Location:904 → 967
      SAM; Sterile alpha motif
      cd10319
      Location:19 → 186
      EphR_LBD; Ligand Binding Domain of Ephrin Receptors
      cd00063
      Location:315 → 404
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:428 → 510
      fn3; Fibronectin type III domain
      pfam07714
      Location:615 → 871
      Pkinase_Tyr; Protein tyrosine kinase
      cl15755
      Location:905 → 964
      SAM_superfamily; SAM (Sterile alpha motif )
      cl21453
      Location:610 → 875
      PKc_like; Protein Kinases, catalytic domain

    RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference KH Primary Assembly

    Genomic

    1. NC_020172.2 Reference KH Primary Assembly

      Range
      3849267..3862403
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases
    Research Materials