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    zf(btb/c2h2) zinc finger protein [ Ciona intestinalis (vase tunicate) ]

    Gene ID: 778799, updated on 3-Dec-2024

    Summary

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    Gene symbol
    zf(btb/c2h2)
    Gene description
    zinc finger protein
    See related
    Ensembl:ENSCING00000000529
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Ciona intestinalis
    Lineage
    Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
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    Genomic context

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    See zf(btb/c2h2) in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    104 current KH (GCF_000224145.3) 14 NC_020179.2 (2030811..2037942, complement)

    Chromosome 14 - NC_020179.2Genomic Context describing neighboring genes Neighboring gene SPARC Neighboring gene zinc finger protein Neighboring gene chondroitin sulfate N-acetylgalactosaminyltransferase 1 Neighboring gene zinc finger C2HC domain-containing protein 1A Neighboring gene transforming growth factor beta receptor

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_020179.2 Chromosome 14 Reference KH Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene expression profiles of transcription factors and signaling molecules in the ascidian embryo: towards a comprehensive understanding of gene networks. Imai KS, et al. Development, 2004 Aug. PMID 15269171
    2. Genomewide surveys of developmentally relevant genes in Ciona intestinalis. Satou Y, et al. Dev Genes Evol, 2003 Jun. PMID 12736827
    3. A cDNA resource from the basal chordate Ciona intestinalis. Satou Y, et al. Genesis, 2002 Aug. PMID 12203911
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cytokine production IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of immune system process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein
    Names
    Ci-ZF(BTB/C2H2)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001078386.2 → NP_001071854.1  zinc finger protein

      See identical proteins and their annotated locations for NP_001071854.1

      Status: VALIDATED

      Source sequence(s)
      EAAA01001219
      UniProtKB/TrEMBL
      A0A1W5BCY9, Q4H2L1, Q4H2L2
      Related
      ENSCINP00000026213, ENSCINT00000026459
      Conserved Domains (4) summary
      smart00225
      Location:33 → 130
      BTB; Broad-Complex, Tramtrack and Bric a brac
      sd00017
      Location:331 → 352
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:443 → 463
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00651
      Location:22 → 127
      BTB; BTB/POZ domain

    2. NM_001078575.2 → NP_001072043.2  zinc finger protein

      Status: VALIDATED

      Source sequence(s)
      EAAA01001219
      UniProtKB/TrEMBL
      A0A1W5BCY9, Q4H2L1, Q4H2L2

    RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference KH Primary Assembly

    Genomic

    1. NC_020179.2 Reference KH Primary Assembly

      Range
      2030811..2037942 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026837429.1 → XP_026693230.1  zinc finger protein isoform X1

      UniProtKB/TrEMBL
      Q4H2L2

    2. XM_026837430.1 → XP_026693231.1  zinc finger protein isoform X2

      UniProtKB/TrEMBL
      Q4H2L2

    RNA

    1. XR_003396536.1 RNA Sequence

    2. XR_001975033.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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