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    LOC8080871 valine--tRNA ligase, mitochondrial 1 [ Sorghum bicolor (sorghum) ]

    Gene ID: 8080871, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC8080871
    Gene description
    valine--tRNA ligase, mitochondrial 1
    Locus tag
    SORBI_3007G054800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sorghum bicolor
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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    Genomic context

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    See LOC8080871 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 7 NC_012876.2 (5543578..5551992, complement)

    Chromosome 7 - NC_012876.2Genomic Context describing neighboring genes Neighboring gene forkhead box protein D1 Neighboring gene uncharacterized LOC8069654 Neighboring gene putative UPF0481 protein At3g02645 Neighboring gene uncharacterized LOC110429521

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_012876.2 Chromosome 7 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables aminoacyl-tRNA editing activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables valine-tRNA ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in valyl-tRNA aminoacylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    valine--tRNA ligase, mitochondrial 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Genomic

    1. NC_012876.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

      Range
      5543578..5551992 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002445074.2 → XP_002445119.1  valine--tRNA ligase, mitochondrial 1

      See identical proteins and their annotated locations for XP_002445119.1

      UniProtKB/TrEMBL
      A0A921U8T4, C5YHH1
      Conserved Domains (1) summary
      PLN02381
      Location:7 → 1056
      PLN02381; valyl-tRNA synthetase
    Nucleotide Protein
    Heading Accession and Version

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